Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_F17
         (890 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    33   0.21 
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    33   0.21 
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   4.5  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   4.5  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   4.5  
AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z81088-4|CAB03125.1|  105|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AC024809-7|AAF59540.1|  315|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +1

Query: 568 GGGGGXXXXKKXPPPXGXGGFFXGPXPLXP 657
           G GGG       PPP G GGF   P P  P
Sbjct: 652 GSGGGSSMPMPVPPPGGLGGFMPPPPPPPP 681


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +1

Query: 568 GGGGGXXXXKKXPPPXGXGGFFXGPXPLXP 657
           G GGG       PPP G GGF   P P  P
Sbjct: 652 GSGGGSSMPMPVPPPGGLGGFMPPPPPPPP 681


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 602 PPPPXXXGVFFXGPXPXPP 658
           PPPP   G F  GP P PP
Sbjct: 771 PPPPPPPGGFKGGPPPPPP 789


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 602 PPPPXXXGVFFXGPXPXPP 658
           PPPP   G F  GP P PP
Sbjct: 771 PPPPPPPGGFKGGPPPPPP 789


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 602 PPPPXXXGVFFXGPXPXPP 658
           PPPP   G F  GP P PP
Sbjct: 354 PPPPPPPGGFKGGPPPPPP 372


>AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical
           protein F54A3.6 protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 597 KXPPPPGXXGFFFXAPSPXP 656
           K  PPP   G+FF AP P P
Sbjct: 321 KPNPPPPSAGYFFQAPPPAP 340


>Z81088-4|CAB03125.1|  105|Caenorhabditis elegans Hypothetical
           protein F53F1.4 protein.
          Length = 105

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +1

Query: 550 FFXXXGGGGGGXXXXKKXPPPXGXGG 627
           F    GGGGG        PPP G GG
Sbjct: 17  FLLPSGGGGGCGCAPPPPPPPCGCGG 42


>AC024809-7|AAF59540.1|  315|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.9 protein.
          Length = 315

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 565 GGGGGGXXXXKKXPPPXGXGG 627
           GG GGG       PPP G GG
Sbjct: 202 GGSGGGSGRFPPPPPPYGGGG 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,990,220
Number of Sequences: 27780
Number of extensions: 158955
Number of successful extensions: 1350
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)