Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_F16
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...   276   3e-75
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    29   1.2  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    28   1.6  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   2.7  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   4.8  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    26   6.3  

>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score =  276 bits (677), Expect = 3e-75
 Identities = 129/237 (54%), Positives = 170/237 (71%), Gaps = 1/237 (0%)
 Frame = +2

Query: 140 TLKNLSASLMRTTERIKLVVPHRNACVTVQHHCHDCLIIGAGGAGLRTAVGLAQQQFSVA 319
           TLK +++S      R K V    +    V  H +D +++GAGGAGLR   GLA+  F+ A
Sbjct: 25  TLKKIASS---QPLRAKQVSTSESVKYPVIDHTYDAIVVGAGGAGLRATFGLAEAGFNTA 81

Query: 320 VVSKLYPTRSHTIAAQGGMNAAIGSMHPDDWRWHFYDTVKGSDWLGDQDSIHYLTREAPN 499
            ++KL+PTRSHT+AAQGG+NAA+G+M  DDWRWHFYDTVKGSDWLGDQD+IHY+T+EAP 
Sbjct: 82  CITKLFPTRSHTVAAQGGINAALGNMTKDDWRWHFYDTVKGSDWLGDQDAIHYMTKEAPK 141

Query: 500 VAIELENMGMPFSRTKDGKIYQRPFGGSTTHNGK-EVAKRTCCVADRTGHALLHTLYGYS 676
             +ELE+ G+PFSRTK+GKIYQR FGG +   GK   A R   VADRTGH++LHTLYG S
Sbjct: 142 AVLELEHFGVPFSRTKEGKIYQRAFGGQSLEYGKGGQAYRCAAVADRTGHSILHTLYGQS 201

Query: 677 TKLKNIDHFAEFFVLDLLIQDGVVVGAVALDMDDSSIHRFQAKNTVIATXGXPRYVF 847
            K  N + F E+F +DL+++ G   G +A++++D SIHRF+A  T++AT G  R  F
Sbjct: 202 LK-HNTNFFIEYFAMDLIMEGGECRGVIAMNLEDGSIHRFRAHKTILATGGYGRAYF 257


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -3

Query: 451 PIRAFDSIIEVPAPIIRVHTTNSSIHSALRCDSVGPRWVQL--GHYSY 314
           P+   D +  +P  I++    N  IHS L C  V P W ++   H SY
Sbjct: 232 PLLKKDILSNLPFSIVQSILLNLDIHSFLSCRLVSPTWNRILDVHTSY 279


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
 Frame = +2

Query: 242 DCLIIGAGGAGLRTAVGLAQQ------QFSVAVVSKLYPTRSHTIAAQGGMNAAIGSMHP 403
           D  I+GAG AGL  A+ + QQ         V V+ K     +H+++       A+  + P
Sbjct: 92  DVCIVGAGPAGLSAAIRIKQQAAKANRDIRVVVLEKAAEPGNHSVSGAVIQPTALDELLP 151

Query: 404 DDWR 415
            +WR
Sbjct: 152 -NWR 154


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +2

Query: 737  DGVVVGAVALDMDDSSIHRFQAKNTVIATXGXPRYVFL-VXSGPHLHRVMDAP 892
            +GV + +  LD D SS+H+  A+   ++    PR  FL + + P LH  + +P
Sbjct: 1023 EGVALPSATLDSDKSSLHKRSAE---LSRNNSPRPDFLPLPNQPLLHSNLHSP 1072


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 587 THNGKEVAKRTCCVADRTGHALLHTLYGYSTKLKNIDHFAEFFVLDLL 730
           THN K     +CC   R G+++      Y  ++K+I      F+ DLL
Sbjct: 861 THNSKF---NSCCNIYRLGYSMCMRAQAYLKRMKDIFIPQRMFITDLL 905


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 324 CPSCTQRGPTLSQRRAE*MLLLVVCT 401
           CP  TQ  P +S  +    LLL+VCT
Sbjct: 344 CPLITQLFPLISSPKEMAWLLLIVCT 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,384,814
Number of Sequences: 5004
Number of extensions: 67456
Number of successful extensions: 208
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)