Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_F16
         (897 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D30651-1|BAA21637.1|  646|Caenorhabditis elegans flavoprotein su...   301   3e-82
U41555-9|AAB37034.1|  646|Caenorhabditis elegans Hypothetical pr...   300   1e-81
AF043693-6|AAB97539.1|  640|Caenorhabditis elegans Hypothetical ...   289   2e-78
Z82081-1|CAB04961.2|  396|Caenorhabditis elegans Hypothetical pr...    31   0.85 
U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical pr...    29   3.4  

>D30651-1|BAA21637.1|  646|Caenorhabditis elegans flavoprotein
           subunit of complex II protein.
          Length = 646

 Score =  301 bits (740), Expect = 3e-82
 Identities = 133/209 (63%), Positives = 170/209 (81%), Gaps = 1/209 (0%)
 Frame = +2

Query: 224 VQHHCHDCLIIGAGGAGLRTAVGLAQQQFSVAVVSKLYPTRSHTIAAQGGMNAAIGSMHP 403
           V  H +D +++GAGGAGLR A+GLA++    AV++KL+PTRSHT+AAQGG+NAA+G+M+P
Sbjct: 38  VVDHAYDAVVVGAGGAGLRAAMGLAEEGLKTAVITKLFPTRSHTVAAQGGINAALGNMNP 97

Query: 404 DDWRWHFYDTVKGSDWLGDQDSIHYLTREAPNVAIELENMGMPFSRTKDGKIYQRPFGGS 583
           D+WRWHFYDTVKGSDWLGDQD+IHY+TREA    IELEN GMPFSRT DGKIYQR FGG 
Sbjct: 98  DNWRWHFYDTVKGSDWLGDQDAIHYMTREAERAVIELENYGMPFSRTTDGKIYQRAFGGQ 157

Query: 584 TTHNGK-EVAKRTCCVADRTGHALLHTLYGYSTKLKNIDHFAEFFVLDLLIQDGVVVGAV 760
           +   G+   A RTCCVADRTGH+LLHTLYG S +  N ++F E+F LDL++++GV VG +
Sbjct: 158 SNDFGRGGQAHRTCCVADRTGHSLLHTLYGASLQY-NCNYFVEYFALDLIMENGVCVGVI 216

Query: 761 ALDMDDSSIHRFQAKNTVIATXGXPRYVF 847
           A+D++D +IHRF++KNTV+AT G  R  F
Sbjct: 217 AMDLEDGTIHRFRSKNTVLATGGYGRAFF 245


>U41555-9|AAB37034.1|  646|Caenorhabditis elegans Hypothetical
           protein C03G5.1 protein.
          Length = 646

 Score =  300 bits (736), Expect = 1e-81
 Identities = 133/209 (63%), Positives = 169/209 (80%), Gaps = 1/209 (0%)
 Frame = +2

Query: 224 VQHHCHDCLIIGAGGAGLRTAVGLAQQQFSVAVVSKLYPTRSHTIAAQGGMNAAIGSMHP 403
           V  H +D +++GAGGAGLR A+GLA+     AV++KL+PTRSHT+AAQGG+NAA+G+M+P
Sbjct: 38  VVDHAYDAVVVGAGGAGLRAAMGLAEGGLKTAVITKLFPTRSHTVAAQGGINAALGNMNP 97

Query: 404 DDWRWHFYDTVKGSDWLGDQDSIHYLTREAPNVAIELENMGMPFSRTKDGKIYQRPFGGS 583
           D+WRWHFYDTVKGSDWLGDQD+IHY+TREA    IELEN GMPFSRT DGKIYQR FGG 
Sbjct: 98  DNWRWHFYDTVKGSDWLGDQDAIHYMTREAERAVIELENYGMPFSRTTDGKIYQRAFGGQ 157

Query: 584 TTHNGK-EVAKRTCCVADRTGHALLHTLYGYSTKLKNIDHFAEFFVLDLLIQDGVVVGAV 760
           +   G+   A RTCCVADRTGH+LLHTLYG S +  N ++F E+F LDL++++GV VG +
Sbjct: 158 SNDFGRGGQAHRTCCVADRTGHSLLHTLYGASLQY-NCNYFVEYFALDLIMENGVCVGVI 216

Query: 761 ALDMDDSSIHRFQAKNTVIATXGXPRYVF 847
           A+D++D +IHRF++KNTV+AT G  R  F
Sbjct: 217 AMDLEDGTIHRFRSKNTVLATGGYGRAFF 245


>AF043693-6|AAB97539.1|  640|Caenorhabditis elegans Hypothetical
           protein C34B2.7 protein.
          Length = 640

 Score =  289 bits (709), Expect = 2e-78
 Identities = 131/209 (62%), Positives = 163/209 (77%), Gaps = 1/209 (0%)
 Frame = +2

Query: 224 VQHHCHDCLIIGAGGAGLRTAVGLAQQQFSVAVVSKLYPTRSHTIAAQGGMNAAIGSMHP 403
           V  H  D +++GAGGAGLR A+GL++     AV++KL+PTRSHT+AAQGG+NAA+G+M+P
Sbjct: 31  VVDHTFDAVVVGAGGAGLRAAMGLSEGGMKTAVITKLFPTRSHTVAAQGGVNAALGNMNP 90

Query: 404 DDWRWHFYDTVKGSDWLGDQDSIHYLTREAPNVAIELENMGMPFSRTKDGKIYQRPFGGS 583
           D+WRWHFYDTVKGSDWLGDQD+IHY+TREA    IELEN GMPFSRT DGKIYQR FGG 
Sbjct: 91  DNWRWHFYDTVKGSDWLGDQDAIHYMTREAERAIIELENYGMPFSRTTDGKIYQRAFGGQ 150

Query: 584 TTHNGK-EVAKRTCCVADRTGHALLHTLYGYSTKLKNIDHFAEFFVLDLLIQDGVVVGAV 760
           +   G+   A RTCCVADRTGH+LLHTLYG S +  + ++F E+F LDL++  G  +G V
Sbjct: 151 SNDFGRGGQAHRTCCVADRTGHSLLHTLYGASLQY-DCNYFVEYFALDLIMDKGKCIGVV 209

Query: 761 ALDMDDSSIHRFQAKNTVIATXGXPRYVF 847
           ALD++   IHRF+AKNTV+AT G  R  F
Sbjct: 210 ALDIETGQIHRFRAKNTVLATGGYGRAYF 238


>Z82081-1|CAB04961.2|  396|Caenorhabditis elegans Hypothetical
           protein W09H1.1a protein.
          Length = 396

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 19/78 (24%), Positives = 35/78 (44%)
 Frame = +1

Query: 139 DTEEPVSLLNEND*KDQTSCSSSKRLRHGPAPLPRLPHHRSGGSRLANRRWSGATTILGS 318
           D+++  SL+N+N+  ++  C ++  +   P P P L   RS          S  T +   
Sbjct: 31  DSKQIHSLINKNNTFNRILCKNADTVADSPTPTPSLTASRSSSVISIASTVSTETVVSSG 90

Query: 319 CSVQAVPNEVPHYRSAGR 372
             ++  P +V   +SA R
Sbjct: 91  RLIKVAPAKVRQSKSASR 108


>U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical
           protein ZC155.3 protein.
          Length = 845

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 442 LGLARRSGLNPLSHA*STKRGYRIGKYG 525
           LG+AR   L+ ++   S K  Y+IG+YG
Sbjct: 72  LGMAREEALHAITFGHSAKCSYKIGRYG 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,319,589
Number of Sequences: 27780
Number of extensions: 400569
Number of successful extensions: 1080
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)