Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_F12
         (921 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0897 - 6903294-6903401,6903781-6903855,6904239-6904379,690...    40   0.002
05_01_0123 - 846081-846167,846264-846404,846749-846866,847382-84...    34   0.18 
04_04_0881 + 29055724-29059197                                         32   0.74 
11_06_0740 - 26824351-26824669,26824749-26825164                       30   3.0  
02_05_0445 + 29088216-29088362,29089161-29089386,29089903-290899...    29   5.2  
11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458     28   9.1  
09_03_0110 + 12432562-12432801,12432811-12433419                       28   9.1  

>06_01_0897 -
           6903294-6903401,6903781-6903855,6904239-6904379,
           6904496-6904646,6905035-6905178,6905276-6905366,
           6906071-6906308
          Length = 315

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 14/56 (25%), Positives = 34/56 (60%)
 Frame = +2

Query: 629 FLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTTFRALWRYMYHMYQLDAFTQS 796
           F+ G+T+   D  L P+L H+ +A  ++ ++ +P +   + +YM  ++ +D+F ++
Sbjct: 211 FINGETISAADLSLAPKLYHMEIALGHYKNWSVPDSLSHVKKYMKTIFSMDSFVKT 266


>05_01_0123 -
           846081-846167,846264-846404,846749-846866,847382-847528,
           848439-848441,848590-848627,848808-848851,848959-849016
          Length = 211

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 14/56 (25%), Positives = 30/56 (53%)
 Frame = +2

Query: 629 FLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTTFRALWRYMYHMYQLDAFTQS 796
           F+ G  +   D  L P+L H++VA ++F  ++IP     +  Y   ++  ++F ++
Sbjct: 139 FINGQNISAADLSLAPKLYHLQVALEHFKGWKIPEDLTNVHAYTEALFSRESFIKT 194


>04_04_0881 + 29055724-29059197
          Length = 1157

 Score = 31.9 bits (69), Expect = 0.74
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 671 MPRLQHIRVAGKYFVDFEIPTTFRALWRYMYHMYQLDAFTQSCP 802
           +P+LQ++ +AG  F   ++P  F +LW   +    +++FT S P
Sbjct: 536 LPQLQYVSLAGNSFSG-DVPEGFSSLWSLRHLNLSVNSFTGSMP 578


>11_06_0740 - 26824351-26824669,26824749-26825164
          Length = 244

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 589 GRIDGLLERRGDQVPNGRHYVLFRLRADAE 678
           GR++GLL R G+ +PNG    L  ++ D E
Sbjct: 6   GRLEGLLRRHGNILPNGAEDELPLIKQDVE 35


>02_05_0445 +
           29088216-29088362,29089161-29089386,29089903-29089976,
           29090129-29090353
          Length = 223

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +2

Query: 647 MCCFDCELMPRLQHIRVAGKYFVDFEIPTTFRALWRYMYHMYQLDAFTQSCP 802
           MCC+   L    QH+    +  V   + + F A+W  ++++   +AF  S P
Sbjct: 145 MCCYLSWLRVS-QHLHTLNQVLVGAIVGSAFGAMWFALFNLLVQEAFASSVP 195


>11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458
          Length = 619

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 474 VVSXWHGLHDVTFDL--FVLKYRQPIIDQYGRVCRFEVGAEIWGRLLHVH 331
           + S +   HDV   L  +       +I + G+ C +E+ AE+WG L+ VH
Sbjct: 506 LTSKFQKAHDVANFLSEYCALLANALIKKEGQACLWEILAEVWGHLI-VH 554


>09_03_0110 + 12432562-12432801,12432811-12433419
          Length = 282

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
 Frame = -2

Query: 242 RLPSIVDAFIIS--SIS-GTSPLAVPFSAISSDIVI 144
           R+PS+   ++++   IS G +PLA+P SA SS +VI
Sbjct: 124 RIPSVPTFYVVALTGISVGGAPLAIPPSAFSSGMVI 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,513,283
Number of Sequences: 37544
Number of extensions: 532714
Number of successful extensions: 1542
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1542
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)