Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_F11
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    30   0.39 
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    30   0.52 
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    28   1.6  
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    28   1.6  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   3.6  
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po...    27   4.8  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    27   4.8  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    26   6.3  
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...    26   6.3  
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...    26   6.3  
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...    26   6.3  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    26   8.4  

>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 12/112 (10%)
 Frame = +3

Query: 300 SLITNKKSSCGIYTGIHALFSRGDFRSI---------EGVPL-AKIPHDW-ADYEPDNAG 446
           SL+    +SC I+TG    F R    SI         +  PL  K+P     DY P N  
Sbjct: 11  SLVEETNASCVIHTGDFGFFERSSLPSISERTLRHIVQFSPLIKKLPRSKNFDYYPSNPI 70

Query: 447 GD-ENCILMYPDGNFADVNCTDTFQYVCYKKKTSTVAMSSCGSVDSEYTLSK 599
           GD +N I  +PD   +++      Q++  +KK S       G+ +  + L K
Sbjct: 71  GDLKNSIASHPDCLLSELP-----QFLSQEKKFSVPVYVVWGACEDVHVLEK 117


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 461 TIFVTSSIIWFIIGPIMRNFCQWNSFNGTE 372
           T+F  SS+IW +IGP  R F   N++ G +
Sbjct: 617 TVFFNSSVIWGVIGP-KRMFSGKNTYTGLQ 645


>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/86 (22%), Positives = 38/86 (44%)
 Frame = +3

Query: 510 TFQYVCYKKKTSTVAMSSCGSVDSEYTLSKQTGNCYKFHKVPRTWSRAYMTCLAEGGYLT 689
           T++ V       TV M +   +  E  +++     +K  KVP  W R  +  + + G  T
Sbjct: 35  TYEGVKNANGNYTVTMIAGDGIGPE--IAQSVERIFKAAKVPIEWERVKVYPILKNGTTT 92

Query: 690 IINSQQEATFLKELFAKXPASHMVGR 767
           I +  +E+    ++  K P +  +G+
Sbjct: 93  IPDDAKESVRKNKVALKGPLATPIGK 118


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +3

Query: 276 AALKSSMLSLITNKK---SSCGIYTGIHALFSRGDFRSIEGVPLA 401
           ++L SS  SL+  KK   SS  +    HAL    +F + EGVPLA
Sbjct: 33  SSLHSSENSLVNGKKATVSSTNVPKKRHALDDVSNFHNKEGVPLA 77


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = +1

Query: 397  WQKFLMIGPIMNQIMLEVTKIVS*CILMETSPMLIALIRSSTFAIRKRLQLLL 555
            W KF     ++N + + ++  V+  I ++  P LIA I +S+ ++RK +  LL
Sbjct: 1712 WFKFGNNSNVINTLNVGIST-VNIDIWLDVIPQLIARIHASSLSVRKSVHQLL 1763


>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 423 DYEPDNAGGDENCILMYPDGNFADVNCTD 509
           +Y PD+     N +L YPDG + + N  D
Sbjct: 247 NYSPDDVAPPPNWVLRYPDG-YTESNMPD 274


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 408 PHDWADYEPDNAGGDENCILMYPDGNFADVN 500
           PH W DYE ++    +NC L   +   ADV+
Sbjct: 174 PHCWVDYESNDIESVQNCWLGDENLLLADVD 204


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 768 FWKDIAFIGLHDWNEHGEWLTIN 836
           FWK +A    HDW + G + TI+
Sbjct: 440 FWKYVAVPNPHDWPQVGSYDTIS 462


>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 151 RNCWPPTEQIRINP 110
           RNCWP T  + +NP
Sbjct: 192 RNCWPRTRGVAMNP 205


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 151 RNCWPPTEQIRINP 110
           RNCWP T  + +NP
Sbjct: 192 RNCWPRTRGVAMNP 205


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 151 RNCWPPTEQIRINP 110
           RNCWP T  + +NP
Sbjct: 192 RNCWPRTRGVAMNP 205


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +3

Query: 627 KVPRTWSRAYMTCLAEGGYLTIINSQQEATFLKELFAKXPASHMV 761
           K+ R +S      LA G Y   +   + A  L E FAK   S  V
Sbjct: 749 KISRLYSDMRRESLATGSYPITVRHLESAIRLSEAFAKMQLSEFV 793


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,733,304
Number of Sequences: 5004
Number of extensions: 81836
Number of successful extensions: 205
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)