Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_E21
         (970 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.0  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 20/62 (32%), Positives = 20/62 (32%)
 Frame = +3

Query: 264 GXGXPPPGPXGXGTSXFXXXPGXXPGXXPXPPGPPXGXXXPPXXGPXFXXXPXPRGGXXX 443
           G G PPPGP G G        G   G      G P G    P     F   P   GG   
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPG---GFGGGPGGFGGGLG 252

Query: 444 XF 449
            F
Sbjct: 253 GF 254



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -1

Query: 400 GPXXGGXXXPXGGPGGXGXXPGXXPG 323
           G   GG     GGPGG G  PG   G
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGG 249



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -1

Query: 400 GPXXGGXXXPXGGPGGXGXXPGXXPG 323
           G   GG     GGPGG G  PG   G
Sbjct: 245 GGFGGGLGGFGGGPGGFGGGPGGHGG 270


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +3

Query: 276 PPPGPXGXGTSXFXXXPGXXPGXXPXPPGPP 368
           PPP P   G       PG      P PP PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.151    0.532 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,523,325
Number of Sequences: 5004
Number of extensions: 19296
Number of successful extensions: 34
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)