Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_E17
(933 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,926... 71 2e-12
03_02_0544 - 9362615-9362674,9362783-9362857,9362934-9363144,936... 50 3e-06
05_04_0333 + 20333243-20333329,20335048-20335110,20335276-203353... 48 1e-05
05_03_0407 + 13582595-13582681,13583067-13583129,13583289-135833... 48 1e-05
07_01_1091 - 10015180-10015236,10015705-10015779,10015874-100161... 46 6e-05
09_04_0425 - 17448906-17449195,17449489-17449600 31 1.3
03_05_0980 - 29384046-29384117,29384901-29384998,29385656-293857... 30 3.0
09_06_0256 + 21887666-21888670 29 5.3
03_02_0127 + 5777564-5779879 29 5.3
10_08_0894 - 21365629-21365766,21365849-21365950,21366042-213662... 28 9.2
06_03_1252 + 28753584-28753883,28754693-28754886,28755192-28755597 28 9.2
01_03_0044 - 11927272-11928516 28 9.2
>01_01_1165 -
9267891-9268145,9268395-9268510,9268991-9269127,
9269645-9269808,9269892-9269972,9270783-9270962,
9271489-9271929,9273234-9273344,9274355-9274463,
9274618-9274643,9274823-9274903,9275013-9275211,
9275374-9275449,9275553-9275769,9276117-9276155,
9276684-9276783,9276962-9277084,9277171-9277895
Length = 1059
Score = 70.5 bits (165), Expect = 2e-12
Identities = 51/160 (31%), Positives = 75/160 (46%), Gaps = 3/160 (1%)
Frame = +2
Query: 161 PTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSD 340
PT F V++ GTG+ ES++AAAC+ GK VLH+D + YG L++S L F+ SD
Sbjct: 21 PTSFDVVLCGTGLPESVLAAACAAAGKTVLHVDPNPFYGSLFSSLPLPSLPSFLSPSPSD 80
Query: 341 PDRQKQVYNLSEKWFIEKESAQGETTDENKGEPRKVWSQADFAAEYRKFNIDTT-PKLLF 517
+ + + + S E E G R+F D P+LL+
Sbjct: 81 DPAPSPSPSSAAAVDLRRRSPYSEV--ETSGA---------VPEPSRRFTADLVGPRLLY 129
Query: 518 SRGXLVELLISSNIARYAEFRCV--XRVLTWLNDQLMPVP 631
V+LL+ S + + EF+ V +L W D L PVP
Sbjct: 130 CADEAVDLLLRSGGSHHVEFKSVEGGTLLYWDGD-LYPVP 168
>03_02_0544 -
9362615-9362674,9362783-9362857,9362934-9363144,
9363279-9363403,9363492-9363593,9363676-9363738,
9363817-9363897,9364248-9364359,9364454-9364626,
9364722-9364829,9364909-9364992,9365131-9365193,
9365652-9365738
Length = 447
Score = 49.6 bits (113), Expect = 3e-06
Identities = 25/60 (41%), Positives = 35/60 (58%)
Frame = +2
Query: 167 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDPD 346
++ VIV+GTG+ E I++ S G VLHMD +D+YGG S N L K K + P+
Sbjct: 4 EYDVIVLGTGLKECIISGLLSVDGLKVLHMDRNDYYGGESTSLNLTKLWKRFKGNETAPE 63
Score = 41.9 bits (94), Expect = 7e-04
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Frame = +2
Query: 407 GETTDENKGEPRKVWSQADFAAEY----RKFNIDTTPKLLFSRGXLVELLISSNIARYAE 574
GE+T N + K + + A E+ +++N+D PK + + G LV +LI +++ +Y
Sbjct: 41 GESTSLNLTKLWKRFKGNETAPEHLGVSKEYNVDMVPKFMMANGALVRVLIHTSVTKYLN 100
Query: 575 FRCVXRVLTWLNDQLMPVP 631
F+ V + N ++ VP
Sbjct: 101 FKAVDGSFVYNNGKIHKVP 119
>05_04_0333 +
20333243-20333329,20335048-20335110,20335276-20335359,
20335720-20335827,20335969-20336141,20337135-20337246,
20337468-20337548,20337635-20337697,20337779-20337880,
20338070-20338194,20338317-20338527,20338625-20338699,
20338990-20339043
Length = 445
Score = 47.6 bits (108), Expect = 1e-05
Identities = 24/59 (40%), Positives = 34/59 (57%)
Frame = +2
Query: 167 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDP 343
++ VIV+GTG+ E I++ S G VLHMD +D+YGG S N L K + + P
Sbjct: 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGDSTSLNLNQLWKRFRGEDKPP 62
Score = 37.5 bits (83), Expect = 0.015
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +2
Query: 479 RKFNIDTTPKLLFSRGXLVELLISSNIARYAEFRCVXRVLTWLNDQLMPVP 631
R +N+D PK + + G LV LI +++ +Y F+ V + ++ VP
Sbjct: 69 RDYNVDMVPKFMMANGTLVRTLIHTDVTKYLSFKAVDGSYVFSKGKIHKVP 119
>05_03_0407 +
13582595-13582681,13583067-13583129,13583289-13583372,
13583757-13583864,13584018-13584190,13585190-13585301,
13585424-13585504,13585611-13585673,13585764-13585865,
13586063-13586187,13586316-13586526,13586614-13586688,
13586950-13587003
Length = 445
Score = 47.6 bits (108), Expect = 1e-05
Identities = 24/59 (40%), Positives = 34/59 (57%)
Frame = +2
Query: 167 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDP 343
++ VIV+GTG+ E I++ S G VLHMD +D+YGG S N L K + + P
Sbjct: 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGDSTSLNLNQLWKRFRGEDKPP 62
Score = 36.3 bits (80), Expect = 0.035
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +2
Query: 479 RKFNIDTTPKLLFSRGXLVELLISSNIARYAEFRCVXRVLTWLNDQLMPVP 631
+ +N+D PK + + G LV LI +++ +Y F+ V + ++ VP
Sbjct: 69 KDYNVDMVPKFMMANGTLVRTLIHTDVTKYLSFKAVDGSYVFSKGKIHKVP 119
>07_01_1091 -
10015180-10015236,10015705-10015779,10015874-10016149,
10016204-10016332,10017070-10017171,10017626-10017688,
10017776-10017856,10018218-10018314,10019064-10019236,
10019327-10019434,10019706-10019789,10019985-10020047,
10020483-10020569
Length = 464
Score = 45.6 bits (103), Expect = 6e-05
Identities = 24/59 (40%), Positives = 33/59 (55%)
Frame = +2
Query: 167 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDP 343
++ VIV+GTG+ E I++ S VLHMD +D+YGG S N L K K + P
Sbjct: 4 EYDVIVLGTGLKECILSGLLSVDRLKVLHMDRNDYYGGDSTSLNLNQLWKRFKGEGTPP 62
Score = 37.1 bits (82), Expect = 0.020
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +2
Query: 479 RKFNIDTTPKLLFSRGXLVELLISSNIARYAEFRCVXRVLTWLNDQLMPVP 631
R +N+D PK + + G LV +LI + + +Y F+ V + ++ VP
Sbjct: 69 RDYNVDMIPKFMMANGTLVRVLIHTGVTKYLSFKAVDGSYVFNKGKIHKVP 119
>09_04_0425 - 17448906-17449195,17449489-17449600
Length = 133
Score = 31.1 bits (67), Expect = 1.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 517 EQQLWSCINVKFPILRCKISLAPYFSWF 434
++Q++ C ++ FP++ SL YF WF
Sbjct: 44 QRQMFYCTHLNFPVMLATCSLKSYFLWF 71
>03_05_0980 -
29384046-29384117,29384901-29384998,29385656-29385725,
29386260-29386391,29386823-29387083,29387266-29387336,
29387520-29387587,29388676-29388869
Length = 321
Score = 29.9 bits (64), Expect = 3.0
Identities = 20/78 (25%), Positives = 36/78 (46%)
Frame = +2
Query: 176 VIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDPDRQK 355
V V+GT + E +++ R + + GGL A Y L K E++S + +K
Sbjct: 101 VDVMGTRLAEEVLSLVQRRPELQKISFVAHS-LGGLIARYAIALLYKSATEIDSHEEHEK 159
Query: 356 QVYNLSEKWFIEKESAQG 409
Q+ ++S I++ G
Sbjct: 160 QITDVSSNQLIDRGKIAG 177
>09_06_0256 + 21887666-21888670
Length = 334
Score = 29.1 bits (62), Expect = 5.3
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 173 QVIVVGTGMVESIVAA-ACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDPDR 349
Q+ G G + +V+A A I + + +++S H G A + IKE N D +
Sbjct: 168 QLADAGPGALSELVSAYANGSIQEKLDKVENSGHVEGRAAESDVNVSSPRIKEANEDAEE 227
Query: 350 QKQVYNLSEK 379
+V+++S+K
Sbjct: 228 VDKVWDMSKK 237
>03_02_0127 + 5777564-5779879
Length = 771
Score = 29.1 bits (62), Expect = 5.3
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Frame = +2
Query: 308 LQKFIKEVNSDPDRQKQVYNLSEKWFIEKESAQGETTDENKGEPRKVWSQADFAAEYRKF 487
LQ+ +E++ D ++ + LSE E +G T ++N + K Q +
Sbjct: 562 LQQSPEELSEDEFYEEYDFELSELDESGTED-EGPTINKNSYDHLKADGQRPKRISALEQ 620
Query: 488 NIDT-TP-KLLFSRGXLVELLISSNIARYAEFR 580
+ D+ TP KL F RG +VEL SN R +FR
Sbjct: 621 DDDSATPYKLKFKRGKIVELQPDSNGPRKLKFR 653
>10_08_0894 -
21365629-21365766,21365849-21365950,21366042-21366284,
21366685-21366813,21366999-21367103,21367196-21367387,
21367486-21367639,21368148-21368209,21368291-21368437,
21368517-21368564,21369091-21369228,21369305-21369451,
21370579-21370665,21370754-21370861,21370941-21371041,
21371870-21371996,21372820-21372936,21373029-21373106,
21373240-21373284,21373637-21373756,21373838-21373964,
21374033-21374253,21374347-21374529,21374772-21374924,
21375051-21375146,21375226-21375331,21375410-21375492,
21375576-21375728,21375819-21376058,21376367-21376414,
21376782-21376928,21377007-21377115,21377200-21377345,
21377715-21377809,21377944-21378049,21378177-21378368,
21378456-21378686,21378772-21378866,21379426-21379529,
21380040-21380284,21380300-21380347,21380376-21380480,
21380630-21380767,21381458-21381649,21381738-21381914,
21382001-21382129,21382203-21382316,21382407-21382746,
21382836-21383064,21383155-21383455,21384311-21384358,
21387963-21388355
Length = 2493
Score = 28.3 bits (60), Expect = 9.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 353 KQVYNLSEKWFIEKESAQGET 415
+Q ++ EKW +EK +AQGET
Sbjct: 664 RQSHSNLEKWLVEKLTAQGET 684
>06_03_1252 + 28753584-28753883,28754693-28754886,28755192-28755597
Length = 299
Score = 28.3 bits (60), Expect = 9.2
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 341 PDRQKQVYNLSEKWFIEKESAQGETTDENKGEPRKVWSQADFAAEYRKFNI 493
P RQ V+ + W E+ + QG G + WS+A F A YR++N+
Sbjct: 187 PTRQP-VHVFASIWNAEEWATQG-------GRVKTDWSRAPFVATYRRYNV 229
>01_03_0044 - 11927272-11928516
Length = 414
Score = 28.3 bits (60), Expect = 9.2
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 167 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASY 295
DF VIVVG G++ S A A + G L ++ D L +S+
Sbjct: 20 DFDVIVVGAGIMGSCAAHAAASRGARALLLERFDLLHHLGSSH 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,985,500
Number of Sequences: 37544
Number of extensions: 357243
Number of successful extensions: 963
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -