Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_E17
(933 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC091125-8|AAP46267.1| 353|Caenorhabditis elegans Hypothetical ... 100 2e-21
AC091125-7|AAK27890.1| 510|Caenorhabditis elegans Hypothetical ... 100 2e-21
Z99281-33|CAJ44242.1| 459|Caenorhabditis elegans Hypothetical p... 44 5e-11
Z99281-32|CAB16511.1| 444|Caenorhabditis elegans Hypothetical p... 44 5e-11
U00002-1|AAA17051.1| 444|Caenorhabditis elegans rabGDI protein. 44 5e-11
Z66512-1|CAA91322.1| 638|Caenorhabditis elegans Hypothetical pr... 36 0.055
AC024843-3|AAF60838.1| 110|Caenorhabditis elegans Hypothetical ... 33 0.39
U23529-6|AAL32208.1| 384|Caenorhabditis elegans Hypothetical pr... 31 1.6
U23529-5|AAL32212.2| 385|Caenorhabditis elegans Hypothetical pr... 30 2.7
U39652-1|AAA80403.2| 552|Caenorhabditis elegans Abnormal cell m... 29 3.6
AB126261-1|BAD02168.1| 552|Caenorhabditis elegans MIG-23 protein. 29 3.6
Z49937-1|CAA90184.2| 670|Caenorhabditis elegans Hypothetical pr... 28 8.3
AF014939-7|AAB63929.2| 343|Caenorhabditis elegans Serpentine re... 28 8.3
>AC091125-8|AAP46267.1| 353|Caenorhabditis elegans Hypothetical
protein Y67D2.1b protein.
Length = 353
Score = 100 bits (239), Expect = 2e-21
Identities = 54/161 (33%), Positives = 92/161 (57%), Gaps = 10/161 (6%)
Frame = +2
Query: 146 MDEXFPTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNF----EGLQ 313
MDE P V+V+GTG+ E+I+A+AC+R G +VLH+D +++YGG W+S+ E +
Sbjct: 1 MDEKLPESVDVVVLGTGLPEAILASACARAGLSVLHLDRNEYYGGDWSSFTMSMVHEVTE 60
Query: 314 KFIKEVNSDPDRQKQVYNLSEKWFIE------KESAQGETTDENKGEPRKVWSQADFAAE 475
+K+++S + + IE E+ + K E + + +Q + A++
Sbjct: 61 NQVKKLDSSEISKLSELLTENEQLIELGNREIVENIEMTWIPRGKDEEKPMKTQLEEASQ 120
Query: 476 YRKFNIDTTPKLLFSRGXLVELLISSNIARYAEFRCVXRVL 598
R+F+ID PK+L S+G +V+ L S ++ YAEF+ V R L
Sbjct: 121 MRRFSIDLVPKILLSKGAMVQTLCDSQVSHYAEFKLVNRQL 161
>AC091125-7|AAK27890.1| 510|Caenorhabditis elegans Hypothetical
protein Y67D2.1a protein.
Length = 510
Score = 100 bits (239), Expect = 2e-21
Identities = 54/161 (33%), Positives = 92/161 (57%), Gaps = 10/161 (6%)
Frame = +2
Query: 146 MDEXFPTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNF----EGLQ 313
MDE P V+V+GTG+ E+I+A+AC+R G +VLH+D +++YGG W+S+ E +
Sbjct: 1 MDEKLPESVDVVVLGTGLPEAILASACARAGLSVLHLDRNEYYGGDWSSFTMSMVHEVTE 60
Query: 314 KFIKEVNSDPDRQKQVYNLSEKWFIE------KESAQGETTDENKGEPRKVWSQADFAAE 475
+K+++S + + IE E+ + K E + + +Q + A++
Sbjct: 61 NQVKKLDSSEISKLSELLTENEQLIELGNREIVENIEMTWIPRGKDEEKPMKTQLEEASQ 120
Query: 476 YRKFNIDTTPKLLFSRGXLVELLISSNIARYAEFRCVXRVL 598
R+F+ID PK+L S+G +V+ L S ++ YAEF+ V R L
Sbjct: 121 MRRFSIDLVPKILLSKGAMVQTLCDSQVSHYAEFKLVNRQL 161
>Z99281-33|CAJ44242.1| 459|Caenorhabditis elegans Hypothetical
protein Y57G11C.10b protein.
Length = 459
Score = 44.4 bits (100), Expect(2) = 5e-11
Identities = 21/75 (28%), Positives = 41/75 (54%)
Frame = +2
Query: 167 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDPD 346
++ IV+GTG+ E I++ S GK VLH+D +++YGG S + L++ ++ +
Sbjct: 4 EYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGG--ESASLTPLEQLYEKFHGPQA 61
Query: 347 RQKQVYNLSEKWFIE 391
+ +Q W ++
Sbjct: 62 KPQQEMGRGRDWNVD 76
Score = 41.1 bits (92), Expect(2) = 5e-11
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2
Query: 479 RKFNIDTTPKLLFSRGXLVELLISSNIARYAEFRCVXRVLTWLNDQLMPVP 631
R +N+D PK L + G LV+LLI + + RY EF+ + ++ VP
Sbjct: 71 RDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKVP 121
>Z99281-32|CAB16511.1| 444|Caenorhabditis elegans Hypothetical
protein Y57G11C.10a protein.
Length = 444
Score = 44.4 bits (100), Expect(2) = 5e-11
Identities = 21/75 (28%), Positives = 41/75 (54%)
Frame = +2
Query: 167 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDPD 346
++ IV+GTG+ E I++ S GK VLH+D +++YGG S + L++ ++ +
Sbjct: 4 EYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGG--ESASLTPLEQLYEKFHGPQA 61
Query: 347 RQKQVYNLSEKWFIE 391
+ +Q W ++
Sbjct: 62 KPQQEMGRGRDWNVD 76
Score = 41.1 bits (92), Expect(2) = 5e-11
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2
Query: 479 RKFNIDTTPKLLFSRGXLVELLISSNIARYAEFRCVXRVLTWLNDQLMPVP 631
R +N+D PK L + G LV+LLI + + RY EF+ + ++ VP
Sbjct: 71 RDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKVP 121
>U00002-1|AAA17051.1| 444|Caenorhabditis elegans rabGDI protein.
Length = 444
Score = 44.4 bits (100), Expect(2) = 5e-11
Identities = 21/75 (28%), Positives = 41/75 (54%)
Frame = +2
Query: 167 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDPD 346
++ IV+GTG+ E I++ S GK VLH+D +++YGG S + L++ ++ +
Sbjct: 4 EYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGG--ESASLTPLEQLYEKFHGPQA 61
Query: 347 RQKQVYNLSEKWFIE 391
+ +Q W ++
Sbjct: 62 KPQQEMGRGRDWNVD 76
Score = 41.1 bits (92), Expect(2) = 5e-11
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2
Query: 479 RKFNIDTTPKLLFSRGXLVELLISSNIARYAEFRCVXRVLTWLNDQLMPVP 631
R +N+D PK L + G LV+LLI + + RY EF+ + ++ VP
Sbjct: 71 RDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKVP 121
>Z66512-1|CAA91322.1| 638|Caenorhabditis elegans Hypothetical
protein F52H3.2 protein.
Length = 638
Score = 35.5 bits (78), Expect = 0.055
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 4/143 (2%)
Frame = +2
Query: 137 TXMMDEXFPTDFQVIVVGTGMVESIVAAACSRIGKN-VLHMDSSDHYGGLWASYNFEGLQ 313
T ++ F TD VIV+G G AAA +R G N VL + + G + + +F G+
Sbjct: 6 TRLLRRCFQTDVDVIVIGGGHAGCESAAAAARCGSNTVLVTQNKNTIGEMSCNPSFGGIG 65
Query: 314 K--FIKEVNSDPDRQKQVYNLSEKWFIEKESAQGETTDENKGE-PRKVWSQADFAAEYRK 484
K I+EV++ ++ + S + AQG + + RK++ +
Sbjct: 66 KGHLIREVDALDGLCARICDKSAITYQALNRAQGPAVLGLRAQIDRKLYK------TQMQ 119
Query: 485 FNIDTTPKLLFSRGXLVELLISS 553
I++T +L G + ELL+ +
Sbjct: 120 NEINSTKRLEILEGEVAELLVEN 142
>AC024843-3|AAF60838.1| 110|Caenorhabditis elegans Hypothetical
protein Y61A9LA.7 protein.
Length = 110
Score = 32.7 bits (71), Expect = 0.39
Identities = 15/63 (23%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +2
Query: 302 EGLQKFIKEVNSDPDRQKQVYNLSEKWFIEKESAQGETTDENKGEPRKVWSQAD-FAAEY 478
E + +++ ++ S PDR +++ +++ ++ + + +K EP+KV+ D F ++Y
Sbjct: 35 ESMDEYLAQILS-PDRLQELKTAHDEFEAQRRGKRAAISASDKPEPKKVFDIIDQFTSDY 93
Query: 479 RKF 487
+KF
Sbjct: 94 QKF 96
>U23529-6|AAL32208.1| 384|Caenorhabditis elegans Hypothetical
protein C15B12.1 protein.
Length = 384
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 164 TDFQVIVVGTGMVESIVAAACSRIGKNVLHMD 259
TD+ V+VVG G+ S A C +IG L ++
Sbjct: 3 TDYDVVVVGAGIFGSCTAYNCQKIGLKTLLLE 34
>U23529-5|AAL32212.2| 385|Caenorhabditis elegans Hypothetical
protein C15B12.8 protein.
Length = 385
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +2
Query: 170 FQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDPD 346
+ VIVVG G+ S A C R+G L + + Y ++ + G + I+ ++DP+
Sbjct: 6 YDVIVVGAGIFGSCTAYHCQRLGLRTLLL---EQYSLGHSNGSSHGKSRIIRYAHTDPE 61
>U39652-1|AAA80403.2| 552|Caenorhabditis elegans Abnormal cell
migration protein 23 protein.
Length = 552
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 477 YSAAKSAWLHTFLGSPLFSSVVSPCADSFSINHFSDKLYTCFCLSGSLFT 328
+S+++S W F S +F V CA S+ F DK + F +S S ++
Sbjct: 485 HSSSESLWAPLFFLSAVFCLFVLVCAKEQSVLCFDDKRRSSFGMSRSQYS 534
>AB126261-1|BAD02168.1| 552|Caenorhabditis elegans MIG-23 protein.
Length = 552
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 477 YSAAKSAWLHTFLGSPLFSSVVSPCADSFSINHFSDKLYTCFCLSGSLFT 328
+S+++S W F S +F V CA S+ F DK + F +S S ++
Sbjct: 485 HSSSESLWAPLFFLSAVFCLFVLVCAKEQSVLCFDDKRRSSFGMSRSQYS 534
>Z49937-1|CAA90184.2| 670|Caenorhabditis elegans Hypothetical
protein F14F3.2 protein.
Length = 670
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +2
Query: 245 VLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDPDRQKQ--VYNLSEKWFIEKESAQGETT 418
++H ++ + +W S +EG KF K + DP K+ V EK + + + E
Sbjct: 70 LVHALNTSNTNMIWESALYEGSTKFQKPMAQDPSHIKEQFVKEKYEKLTFQPKRGKDEDL 129
Query: 419 DENKGEPRKVWSQADFA 469
+ + +++DFA
Sbjct: 130 ENSLNRQLIACARSDFA 146
>AF014939-7|AAB63929.2| 343|Caenorhabditis elegans Serpentine
receptor, class h protein192 protein.
Length = 343
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 418 SCFALCRFLFNKPFFR*VVHLFLSIRITVHFF 323
SC A + N FF +H+ I I +HFF
Sbjct: 4 SCIAKANYFDNPEFFLLCMHIVTVISIPIHFF 35
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,387,662
Number of Sequences: 27780
Number of extensions: 314526
Number of successful extensions: 1065
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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