Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_E16
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    29   0.91 
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    27   2.8  
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha...    27   4.9  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    26   8.5  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    26   8.5  

>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 635 AAKNHRHGVKNPRAQGKREYTVEEILNSRKIYGPLTKLE 751
           A  +HRH +  PRA G      E   N+R+  GPL++ E
Sbjct: 270 AIVSHRH-LALPRAPGPDSRAAERFFNARRKAGPLSRRE 307


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 562 CCNGSSC*ISNFCHFKCVPVHWVG 491
           C  GSSC  SN  + +C+PV + G
Sbjct: 44  CVVGSSCIYSNPWYSQCIPVDYTG 67


>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
           Isp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +2

Query: 212 LEALADARIKYDDIQQAVCGYVFGDSTCGQRVLYQVGMTGIPIYNV 349
           L  ++   +KYDDI +    YV+ DS+ G  +   V  TG+ I++V
Sbjct: 189 LARISHKSVKYDDIGK----YVY-DSSAGDNITAYVVDTGVSIHHV 229


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
            Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 614  ELHLAKIAAKNHRHGVKNPRAQGKREYTVEEILN 715
            +LH+ K+ +K+    V+  R+QGK+   VE +++
Sbjct: 931  QLHIQKMVSKSVMPVVERLRSQGKKYQLVEAVVD 964


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 636 AILARWSSVVPYFFMCSMAALPKYCAVMGAPVKSAISAILS 514
           A+ A    V P   +CS A     C+  G P  S IS +LS
Sbjct: 359 AVSANAFPVTPNTTICSNAVKNLKCSANGTPSGSKISQVLS 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,289,299
Number of Sequences: 5004
Number of extensions: 70435
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)