Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_E13
(1056 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14635-8|AAK84492.1| 307|Caenorhabditis elegans Collagen protei... 35 0.085
L15418-1|AAA17445.1| 307|Caenorhabditis elegans col-36 collagen... 35 0.085
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.45
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.45
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.45
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.0
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.0
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 31 1.8
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 31 1.8
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 31 1.8
U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical pr... 30 3.2
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 29 4.2
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 29 4.2
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 29 4.2
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 29 5.6
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 29 5.6
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 29 7.4
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 28 9.7
AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical... 28 9.7
>U14635-8|AAK84492.1| 307|Caenorhabditis elegans Collagen protein 36
protein.
Length = 307
Score = 35.1 bits (77), Expect = 0.085
Identities = 22/73 (30%), Positives = 26/73 (35%)
Frame = -3
Query: 1051 GXGGXRXQGXXXVFXXQXGGEXGXRPXXGATGXPDGXGXXXLXXXXGRGXKGRAXGXGPX 872
G G Q + G G R G G G L G+G G A G GP
Sbjct: 215 GPPGPAGQPGRVIQVNGAAGPAGPRGVKGPPGPKGLPGIAGLTEIGGQGPPGDAGGPGPV 274
Query: 871 XGEGPXXXQQXRG 833
G+GP Q +G
Sbjct: 275 GGQGPPGPQGPQG 287
>L15418-1|AAA17445.1| 307|Caenorhabditis elegans col-36 collagen
protein.
Length = 307
Score = 35.1 bits (77), Expect = 0.085
Identities = 22/73 (30%), Positives = 26/73 (35%)
Frame = -3
Query: 1051 GXGGXRXQGXXXVFXXQXGGEXGXRPXXGATGXPDGXGXXXLXXXXGRGXKGRAXGXGPX 872
G G Q + G G R G G G L G+G G A G GP
Sbjct: 215 GPPGPAGQPGRVIQVNGAAGPAGPRGVKGPPGPKGLPGIAGLTEIGGQGPPGDAGGPGPV 274
Query: 871 XGEGPXXXQQXRG 833
G+GP Q +G
Sbjct: 275 GGQGPPGPQGPQG 287
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.7 bits (71), Expect = 0.45
Identities = 23/76 (30%), Positives = 23/76 (30%)
Frame = +3
Query: 771 PAXXPPPHSPLXGVXXL*SXXPRXCCXXXGPSPXXGPXPXARPLXPLPXXXXXXXXPXPS 950
PA PPP P G P P P G P R P P P
Sbjct: 233 PAGSPPPPPPPKG------SPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 286
Query: 951 GXPVAPLXGRXPXSPP 998
G P P G P PP
Sbjct: 287 GSPPPPRAGSPPPPPP 302
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.7 bits (71), Expect = 0.45
Identities = 23/76 (30%), Positives = 23/76 (30%)
Frame = +3
Query: 771 PAXXPPPHSPLXGVXXL*SXXPRXCCXXXGPSPXXGPXPXARPLXPLPXXXXXXXXPXPS 950
PA PPP P G P P P G P R P P P
Sbjct: 254 PAGSPPPPPPPKG------SPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 307
Query: 951 GXPVAPLXGRXPXSPP 998
G P P G P PP
Sbjct: 308 GSPPPPRAGSPPPPPP 323
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.7 bits (71), Expect = 0.45
Identities = 23/76 (30%), Positives = 23/76 (30%)
Frame = +3
Query: 771 PAXXPPPHSPLXGVXXL*SXXPRXCCXXXGPSPXXGPXPXARPLXPLPXXXXXXXXPXPS 950
PA PPP P G P P P G P R P P P
Sbjct: 239 PAGSPPPPPPPKG------SPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 292
Query: 951 GXPVAPLXGRXPXSPP 998
G P P G P PP
Sbjct: 293 GSPPPPRAGSPPPPPP 308
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 31.5 bits (68), Expect = 1.0
Identities = 28/101 (27%), Positives = 29/101 (28%), Gaps = 5/101 (4%)
Frame = +3
Query: 765 PXPAXXPPPHSPLXGVXXL*SXXPRXCCXXXGPSPXXG--PXPXARPLXPLPXXXXXXXX 938
P PPP P G+ P P P G P P P P P
Sbjct: 268 PSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGP 327
Query: 939 PXPSGXPVAPLXG-RXPXS--PPXCXXNTXXXPWXRXPPXP 1052
P G P P G R P PP P PP P
Sbjct: 328 PGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPP 368
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 31.5 bits (68), Expect = 1.0
Identities = 28/101 (27%), Positives = 29/101 (28%), Gaps = 5/101 (4%)
Frame = +3
Query: 765 PXPAXXPPPHSPLXGVXXL*SXXPRXCCXXXGPSPXXG--PXPXARPLXPLPXXXXXXXX 938
P PPP P G+ P P P G P P P P P
Sbjct: 278 PSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGP 337
Query: 939 PXPSGXPVAPLXG-RXPXS--PPXCXXNTXXXPWXRXPPXP 1052
P G P P G R P PP P PP P
Sbjct: 338 PGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPP 378
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein 34
protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.8
Identities = 18/65 (27%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Frame = +3
Query: 864 SPXXGPXPXARPLXPLPXXXXXXXXPXPSGXPVAPLXGRXPXSPPXCXXN-TXXXPWXRX 1040
+P P P+ P P P P G P P P SP + P +
Sbjct: 128 NPGRPPQQPCEPITPPPCKPCPQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEPGPKG 187
Query: 1041 PPXPP 1055
PP PP
Sbjct: 188 PPGPP 192
Score = 30.3 bits (65), Expect = 2.4
Identities = 21/71 (29%), Positives = 22/71 (30%)
Frame = +3
Query: 843 CCXXXGPSPXXGPXPXARPLXPLPXXXXXXXXPXPSGXPVAPLXGRXPXSPPXCXXNTXX 1022
CC P P P RP P P G P P P +PP C
Sbjct: 99 CCLPGPPGPAGTPGKPGRPGKP-----GAPGLPGNPGRP--PQQPCEPITPPPCKPCPQG 151
Query: 1023 XPWXRXPPXPP 1055
P PP PP
Sbjct: 152 PPGPPGPPGPP 162
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular collagen
RAM-4 protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.8
Identities = 18/65 (27%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Frame = +3
Query: 864 SPXXGPXPXARPLXPLPXXXXXXXXPXPSGXPVAPLXGRXPXSPPXCXXN-TXXXPWXRX 1040
+P P P+ P P P P G P P P SP + P +
Sbjct: 128 NPGRPPQQPCEPITPPPCKPCPQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEPGPKG 187
Query: 1041 PPXPP 1055
PP PP
Sbjct: 188 PPGPP 192
Score = 30.3 bits (65), Expect = 2.4
Identities = 21/71 (29%), Positives = 22/71 (30%)
Frame = +3
Query: 843 CCXXXGPSPXXGPXPXARPLXPLPXXXXXXXXPXPSGXPVAPLXGRXPXSPPXCXXNTXX 1022
CC P P P RP P P G P P P +PP C
Sbjct: 99 CCLPGPPGPAGTPGKPGRPGKP-----GAPGLPGNPGRP--PQQPCEPITPPPCKPCPQG 151
Query: 1023 XPWXRXPPXPP 1055
P PP PP
Sbjct: 152 PPGPPGPPGPP 162
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 30.7 bits (66), Expect = 1.8
Identities = 18/58 (31%), Positives = 20/58 (34%)
Frame = -2
Query: 812 YPXXGGVGGXXXGGXXEPPXXXTXXPXXXXXGXNXPPXGVNWDXPAPXGGXSXXGTXP 639
+P GG GG G PP P G PP + PAP G G P
Sbjct: 19 FPSAGGGGGGCGCGAPPPPPACAPPPAPACGGGAPPPPA--YAAPAPSYGAPAGGAYP 74
>U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical protein
F07C4.7 protein.
Length = 180
Score = 29.9 bits (64), Expect = 3.2
Identities = 23/74 (31%), Positives = 23/74 (31%)
Frame = -3
Query: 1054 GGXGGXRXQGXXXVFXXQXGGEXGXRPXXGATGXPDGXGXXXLXXXXGRGXKGRAXGXGP 875
GG GG R G F GG G G TG G GRG G G
Sbjct: 96 GGNGGGR--GGNGGFDDNGGGRGGNGGGRGGTGGFGDNGGGRGGNGGGRGGNGGGNNGGG 153
Query: 874 XXGEGPXXXQQXRG 833
G G Q G
Sbjct: 154 RGGNGGGRPQISAG 167
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical protein
F23H12.4 protein.
Length = 301
Score = 29.5 bits (63), Expect = 4.2
Identities = 20/71 (28%), Positives = 22/71 (30%)
Frame = +3
Query: 843 CCXXXGPSPXXGPXPXARPLXPLPXXXXXXXXPXPSGXPVAPLXGRXPXSPPXCXXNTXX 1022
CC P P P +P P P PVAP P +PP C
Sbjct: 101 CCLPGPPGPAGAPGKPGKPGRP----GAPGTPGTPGKPPVAPCE---PTTPPPCKPCPQG 153
Query: 1023 XPWXRXPPXPP 1055
P PP P
Sbjct: 154 PPGPPGPPGAP 164
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 29.5 bits (63), Expect = 4.2
Identities = 20/71 (28%), Positives = 22/71 (30%)
Frame = +3
Query: 843 CCXXXGPSPXXGPXPXARPLXPLPXXXXXXXXPXPSGXPVAPLXGRXPXSPPXCXXNTXX 1022
CC P P P +P P P PVAP P +PP C
Sbjct: 96 CCLPGPPGPAGAPGKPGKPGRP----GAPGTPGTPGKPPVAPCE---PTTPPPCKPCPQG 148
Query: 1023 XPWXRXPPXPP 1055
P PP P
Sbjct: 149 PPGPPGPPGAP 159
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.elegans
(nematode)collagen 1 (col-1) gene, complete cds. ).
Length = 296
Score = 29.5 bits (63), Expect = 4.2
Identities = 20/71 (28%), Positives = 22/71 (30%)
Frame = +3
Query: 843 CCXXXGPSPXXGPXPXARPLXPLPXXXXXXXXPXPSGXPVAPLXGRXPXSPPXCXXNTXX 1022
CC P P P +P P P PVAP P +PP C
Sbjct: 96 CCLPGPPGPAGAPGKPGKPGRP----GAPGTPGTPGKPPVAPCE---PTTPPPCKPCPQG 148
Query: 1023 XPWXRXPPXPP 1055
P PP P
Sbjct: 149 PPGPPGPPGAP 159
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein 43
protein.
Length = 303
Score = 29.1 bits (62), Expect = 5.6
Identities = 19/64 (29%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Frame = +3
Query: 867 PXXGPXPXARPLXPLPXXXXXXXXPXPSGXPVAPLXGRXPXSPPXCXXN-TXXXPWXRXP 1043
P P P P P P P G P AP +P + T P R P
Sbjct: 133 PGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDATPGLPGPRGP 192
Query: 1044 PXPP 1055
P PP
Sbjct: 193 PGPP 196
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen protein.
Length = 303
Score = 29.1 bits (62), Expect = 5.6
Identities = 19/64 (29%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Frame = +3
Query: 867 PXXGPXPXARPLXPLPXXXXXXXXPXPSGXPVAPLXGRXPXSPPXCXXN-TXXXPWXRXP 1043
P P P P P P P G P AP +P + T P R P
Sbjct: 133 PGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDATPGLPGPRGP 192
Query: 1044 PXPP 1055
P PP
Sbjct: 193 PGPP 196
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 28.7 bits (61), Expect = 7.4
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +3
Query: 843 CCXXXGPSPXXGPXPXARPLXPLPXXXXXXXXPXPSGXPVAP 968
CC PSP P PL P P P P P P
Sbjct: 70 CCGAPRPSPSCCPYVPPAPLPPPPPPASPCCGPSPVPAPCCP 111
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 28.3 bits (60), Expect = 9.7
Identities = 18/66 (27%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Frame = +3
Query: 864 SPXXGPXPXARPLXPLPXXXXXXXXPXPSGXPVAPLXGRXPXSP--PXCXXNTXXXPWXR 1037
+P P PL P P P P+G P P + P P P P +
Sbjct: 120 NPGRPPKEPCEPLTPPPCKPCPEGPPGPAGPP-GPDGNKGPLGPPGPPGPEGPNGEPGNK 178
Query: 1038 XPPXPP 1055
P PP
Sbjct: 179 GPAGPP 184
>AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical
protein F41E6.11 protein.
Length = 316
Score = 28.3 bits (60), Expect = 9.7
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = +3
Query: 861 PSPXXGPXPXARPLXPLPXXXXXXXXPXPSGXPV-APLXGRXPXSPP 998
P+P P P A P PLP P P+ PV P P PP
Sbjct: 83 PAPAYNPYPCATPPCPLP-YIPEPVAPVPAPAPVYEPYACAAPPCPP 128
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,510,048
Number of Sequences: 27780
Number of extensions: 199682
Number of successful extensions: 535
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2814342022
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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