Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_E11
         (941 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...   215   5e-56
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...   215   5e-56
Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical pr...    94   1e-19
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    30   2.1  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    30   2.1  
Z49132-6|CAA88985.1|  406|Caenorhabditis elegans Hypothetical pr...    30   2.8  
AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical...    28   8.4  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score =  215 bits (524), Expect = 5e-56
 Identities = 102/186 (54%), Positives = 116/186 (62%), Gaps = 1/186 (0%)
 Frame = +2

Query: 374 VVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYK 553
           V+Q+TVKHEQ IDCGGGY+KV     +  D HGETPY +MFGPDICGP T++VHVI +YK
Sbjct: 88  VIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPDICGP-TRRVHVILNYK 146

Query: 554 GKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDP 733
           G+N LIKK+I CK D  THLYTLI+  DNTYEV ID E  ++G LE DWD LP KKIKDP
Sbjct: 147 GENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSLEEDWDLLPAKKIKDP 206

Query: 734 EAKKPEDWXXXXXXXXXXXXXXXXXXXXEHIPDPDAXNLXTGMMXWTXN-GXPYD*XPXY 910
           +AKKPEDW                    EHIPDPDA                P    P Y
Sbjct: 207 DAKKPEDWDEREYIDDAEDAKPEDWEKPEHIPDPDAKKPEDWDDEMDGEWEPPMIDNPEY 266

Query: 911 KGRWAP 928
           KG W P
Sbjct: 267 KGEWKP 272



 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 39/76 (51%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
 Frame = +1

Query: 148 INCDVFFEEKFPDXSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYA 327
           ++ +V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF     D+G++TS+DA+FY+
Sbjct: 13  VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71

Query: 328 LSRKF-KPFSNEGKPL 372
            + KF K FSN+GK L
Sbjct: 72  RAAKFDKDFSNKGKTL 87


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score =  215 bits (524), Expect = 5e-56
 Identities = 102/186 (54%), Positives = 116/186 (62%), Gaps = 1/186 (0%)
 Frame = +2

Query: 374 VVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYK 553
           V+Q+TVKHEQ IDCGGGY+KV     +  D HGETPY +MFGPDICGP T++VHVI +YK
Sbjct: 88  VIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPDICGP-TRRVHVILNYK 146

Query: 554 GKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDP 733
           G+N LIKK+I CK D  THLYTLI+  DNTYEV ID E  ++G LE DWD LP KKIKDP
Sbjct: 147 GENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSLEEDWDLLPAKKIKDP 206

Query: 734 EAKKPEDWXXXXXXXXXXXXXXXXXXXXEHIPDPDAXNLXTGMMXWTXN-GXPYD*XPXY 910
           +AKKPEDW                    EHIPDPDA                P    P Y
Sbjct: 207 DAKKPEDWDEREYIDDAEDAKPEDWEKPEHIPDPDAKKPEDWDDEMDGEWEPPMIDNPEY 266

Query: 911 KGRWAP 928
           KG W P
Sbjct: 267 KGEWKP 272



 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 39/76 (51%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
 Frame = +1

Query: 148 INCDVFFEEKFPDXSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYA 327
           ++ +V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF     D+G++TS+DA+FY+
Sbjct: 13  VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71

Query: 328 LSRKF-KPFSNEGKPL 372
            + KF K FSN+GK L
Sbjct: 72  RAAKFDKDFSNKGKTL 87


>Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK632.6 protein.
          Length = 619

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 55/145 (37%), Positives = 77/145 (53%), Gaps = 14/145 (9%)
 Frame = +2

Query: 365 NPWVVQFTVKHEQDIDCGGGYLKVFD--CKLEQKDMHGETPYEIMFGPDICGPGTKKVHV 538
           N +VVQ+ +K E+  +CGGGYLK+     + +  +   +T Y IMFGPD CG  T KVH+
Sbjct: 136 NTFVVQYDIKFEEGQECGGGYLKLLSEGAEKDLANFQDKTAYTIMFGPDKCG-ATGKVHL 194

Query: 539 IFSYKGKNHLIKKDIRCK----------DDVYTHLYTLIVKPDNTYEVLIDNEKVESGDL 688
           IF YK   +    +              DD  THL+TL+VKP   Y V +D + +  G++
Sbjct: 195 IFRYKNPINGTISEYHANQPTTIGSTYWDDHNTHLFTLVVKPTGEYSVSVDGKSLYYGNM 254

Query: 689 EADWD--FLPPKKIKDPEAKKPEDW 757
            +D      PPK+I D    KP DW
Sbjct: 255 MSDVTPALTPPKQIFDETDLKPVDW 279



 Score = 35.1 bits (77), Expect = 0.073
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 626 VKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPEAKKPEDW 757
           VKPD+  E    +   E+     DW+    + I DPEAKKP+DW
Sbjct: 291 VKPDDWDENEPQSVVDEAATKPYDWNEEENELIADPEAKKPQDW 334



 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 659 DNEKVESGDLEADWDFLPPKKIKDPEAKKPEDW 757
           +N + ES     DWD   P+ + D  A KP DW
Sbjct: 283 ENIEDESAVKPDDWDENEPQSVVDEAATKPYDW 315


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
             K07E12.1a protein.
          Length = 13100

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +2

Query: 557   KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVES 679
             K   I+K++ C+D   THL  L    D+TY V ++ NE+V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
          Length = 13100

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +2

Query: 557   KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVES 679
             K   I+K++ C+D   THL  L    D+TY V ++ NE+V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895


>Z49132-6|CAA88985.1|  406|Caenorhabditis elegans Hypothetical
           protein ZK666.6 protein.
          Length = 406

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -2

Query: 889 GXPIXXPXHHPSXQVXGIWIWNVFRLVPIXRLLVFGVWNSGLVI 758
           G  +    H+    V G+W+W+  + +P  +L  +  WN G  I
Sbjct: 305 GFSVPLTYHNGLSMVKGVWVWDQPQGMPQPQLQSYAGWNPGYPI 348


>AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical
           protein Y105E8B.7 protein.
          Length = 269

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 602 YTHLYTLIVKPDN-TYEVLIDNEKVESGDLEADWDFLPP 715
           +TH +TL VKP N  Y+   DN+ ++    E    F  P
Sbjct: 23  HTHKWTLFVKPGNRDYDEFPDNKLIQKVKFEIHESFAQP 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,654,833
Number of Sequences: 27780
Number of extensions: 461137
Number of successful extensions: 1295
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)