Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_E08
         (915 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    34   0.16 
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    34   0.16 
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    34   0.16 
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    33   0.28 
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    33   0.28 
Z68882-13|CAA93102.1|  296|Caenorhabditis elegans Hypothetical p...    29   4.6  
Z70307-10|CAA94328.1|  276|Caenorhabditis elegans Hypothetical p...    29   6.1  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +3

Query: 756 IPGXSPGKXPRAPPXSXPAVTGXPXPXFPLREXVGLFHNPPCRFPNPGLGPXP 914
           +P  + G  P  PP   P +TG P P  P      +   PP   P PG  P P
Sbjct: 719 LPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +3

Query: 756 IPGXSPGKXPRAPPXSXPAVTGXPXPXFPLREXVGLFHNPPCRFPNPGLGPXP 914
           +P  + G  P  PP   P +TG P P  P      +   PP   P PG  P P
Sbjct: 719 LPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +3

Query: 756 IPGXSPGKXPRAPPXSXPAVTGXPXPXFPLREXVGLFHNPPCRFPNPGLGPXP 914
           +P  + G  P  PP   P +TG P P  P      +   PP   P PG  P P
Sbjct: 302 LPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 354


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +3

Query: 759 PGXSPGKXPRAPPX--SXPAVTGXPXPXFP-LREXVGLFHNPPCRFPNPGLGPXP 914
           P   PG  P  PP     P + G P P  P +R   G+   PP R+P+ G G  P
Sbjct: 310 PPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYP 364


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +3

Query: 759 PGXSPGKXPRAPPX--SXPAVTGXPXPXFP-LREXVGLFHNPPCRFPNPGLGPXP 914
           P   PG  P  PP     P + G P P  P +R   G+   PP R+P+ G G  P
Sbjct: 320 PPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYP 374


>Z68882-13|CAA93102.1|  296|Caenorhabditis elegans Hypothetical
           protein C47E12.10 protein.
          Length = 296

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +3

Query: 762 GXSPGKXPRA-PPXSXPAVTGXPXPXFPLREXVGLFHNPPCRFPNPGLGPXP 914
           G  PG  PRA PP S P + G   P +  +   GL  N    F   G GP P
Sbjct: 123 GEQPGAGPRAPPPGSNPGMVGTADPNY--QTLAGL--NNDLVFGGGGGGPAP 170


>Z70307-10|CAA94328.1|  276|Caenorhabditis elegans Hypothetical
           protein C39E9.9 protein.
          Length = 276

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +3

Query: 759 PGXSPGKXPRAP-PXSXPAVTGXPXPXFPLREXVGLFHNPPC-RFPNPGLGP 908
           P   PG+ P AP         G P P FPL +   ++  PPC R P    GP
Sbjct: 87  PAGPPGE-PGAPGDDGWNGDAGQPGPDFPLFDQSLIYQRPPCIRCPVGEPGP 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,307,430
Number of Sequences: 27780
Number of extensions: 141831
Number of successful extensions: 226
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)