Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_E06
         (905 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical pr...   228   4e-60
Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical pr...    29   6.0  
U53141-8|AAA96110.3|  572|Caenorhabditis elegans Prion-like-(q/n...    28   8.0  

>Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical
           protein T05E11.1 protein.
          Length = 210

 Score =  228 bits (558), Expect = 4e-60
 Identities = 108/134 (80%), Positives = 118/134 (88%)
 Frame = +1

Query: 151 AADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVE 330
           A + PE+ LFG+WS   V VSD+SL DYI VKEK AKYLPHSAGR+  +RFRKA CPIVE
Sbjct: 17  ATEAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVE 76

Query: 331 RLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGR 510
           RL NSLMMHGRNNGKKLM VRIVKHAFEII+LLTGENP+QVLV A+INSGPREDSTRIGR
Sbjct: 77  RLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGPREDSTRIGR 136

Query: 511 AGTVRRQAVDVSPL 552
           AGTVRRQAVDV+PL
Sbjct: 137 AGTVRRQAVDVAPL 150



 Score =  125 bits (301), Expect = 5e-29
 Identities = 59/62 (95%), Positives = 61/62 (98%)
 Frame = +2

Query: 548 PWRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKS 727
           P RRVNQAIWLLCTGAREAAFRN+KTIAEC+ADELINAAKGSSNSYAIKKKDELERVAKS
Sbjct: 149 PLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDELERVAKS 208

Query: 728 NR 733
           NR
Sbjct: 209 NR 210


>Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical
           protein F34D10.4 protein.
          Length = 692

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = +2

Query: 554 RRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 733
           +RV   +    T    A  RN   + E  A+E I A +   N +A+K +   +  A SNR
Sbjct: 474 QRVQDTVQKARTAVGYAGTRNRSPLREADAEE-IAATEALKNRFAVKSRGTAKAKANSNR 532

Query: 734 *NILLSHL 757
              LL  +
Sbjct: 533 GAALLESI 540


>U53141-8|AAA96110.3|  572|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 13
           protein.
          Length = 572

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
 Frame = -2

Query: 295 CVHTCQLNE--VNILRTSL*RKCSPAETYQRLAHRSNSICRKA*FQECRRLVVKTWFPQ- 125
           C  TC  N   V+  + S  + C   +  Q +  +S+ +C +A    C+   V    PQ 
Sbjct: 460 CQQTCGSNVQCVSACQNSCQQSCGNQQQQQVIVVQSSPMCGQA----CQAPPVLQCVPQC 515

Query: 124 -PRCLPRLRQSFQFXSA 77
            P C P   Q +QF  A
Sbjct: 516 QPSCQPSCMQQYQFIQA 532


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,324,037
Number of Sequences: 27780
Number of extensions: 403440
Number of successful extensions: 1094
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)