Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_E01
         (911 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    25   1.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   2.2  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 384 LLPSGIINQKCTSVIGNGVVIHLPGLFEELKKNELKGM 497
           L+ SGI  ++    +G  VV+ LPG+ E L  ++  GM
Sbjct: 330 LMLSGIGPKEHLRSLGIPVVVDLPGVGENLHNHQSFGM 367


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +3

Query: 507 EGRLVISDRAHLVFDIH-QQVDGLQEAEKGKNSLGTTKKGIGPAYSAKATRNGIRIGDLL 683
           EG+  I+    L+ ++  Q VDG  +   GKNS  T  + I  A    +   G  IG++L
Sbjct: 2   EGKDAITTEDILLLNLTTQDVDGFLQGFPGKNSPYTVTQAILIALVLGSIIVGTVIGNIL 61

Query: 684 GDFSLF 701
              ++F
Sbjct: 62  VCVAVF 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,285
Number of Sequences: 438
Number of extensions: 6076
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)