Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_D23
(912 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe... 87 2e-18
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|... 62 1e-10
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S... 34 0.024
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.7
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 27 4.9
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 26 6.5
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 26 6.5
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 26 6.5
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe... 26 6.5
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 26 6.5
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 26 8.5
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 26 8.5
>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 310
Score = 87.4 bits (207), Expect = 2e-18
Identities = 66/191 (34%), Positives = 94/191 (49%), Gaps = 8/191 (4%)
Frame = +1
Query: 157 KYIIDNDAGGDDAMAILIAILSEKYFDGPELIALTTGHGNTDEEQVTINNQQILKLAGRQ 336
K IID D G DDA+ L+AI S + EL+ +TT GN T N Q+L LAGR
Sbjct: 2 KIIIDTDPGQDDAITALLAIASPEI----ELLGVTTVAGNVPVSMTTRNALQMLDLAGRP 57
Query: 337 DIPIYRGSAEALV-SPFGNVWYYGLDGLGDNNDSYTDLFPPA----EESAAFALIENSKK 501
DIP+Y GS + L+ +P +G G L PP+ E A +I+ +
Sbjct: 58 DIPVYAGSNKPLLRAPITATHVHGASGF-----EGAVLPPPSRKENEGHAVDFIIDTLRN 112
Query: 502 YE-GSLSVVTIGTLTNIAVAMKYDPKFLDRLSHLYIGAGHL--YSKEXPKPEFNALMDVE 672
E G++++ TIG LTNIA+A+ P+ + R + + AG P EFN +D
Sbjct: 113 NEPGTITICTIGPLTNIALALNKAPEVIQRAKQIVMMAGAFSEVGNITPAAEFNIYVDPH 172
Query: 673 AYHVVMQKADP 705
A +V+ P
Sbjct: 173 AAQMVLSSGIP 183
>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 330
Score = 62.1 bits (144), Expect = 1e-10
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 4/180 (2%)
Frame = +1
Query: 166 IDNDAGGDDAMAILIAILSEKYFDGPELIALTTGHGNTDEEQVTINNQQILKLAGRQDIP 345
ID D G DD +A+ +A + +++ ++T HGNT E T N +++L QD+
Sbjct: 21 IDCDPGHDDVVALTLAACAGHC----KILGVSTVHGNTTLEFTTKNALAVMELLN-QDVD 75
Query: 346 IYRGSAEALVSPFGNVWY-YGLDGLGDNNDSYTDLFPP--AEESAAFALIENSKKYEGSL 516
++ G+A+ L+ + +G +GL S +P A A FA+ Y +
Sbjct: 76 VHAGAAKPLMRESAFATHIHGTNGLA--GISLLPDYPKKKATPDAVFAMYTTISNYPEPV 133
Query: 517 SVVTIGTLTNIAVAMKYDPKFLDRLSH-LYIGAGHLYSKEXPKPEFNALMDVEAYHVVMQ 693
++V G LTNIA+ + P D + +++G + EFN D EA +V++
Sbjct: 134 TLVATGPLTNIALLLATYPSVTDNIERFIFMGGSTGIGNITSQAEFNVYADPEAARLVLE 193
>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 389
Score = 34.3 bits (75), Expect = 0.024
Identities = 42/183 (22%), Positives = 77/183 (42%), Gaps = 16/183 (8%)
Frame = +1
Query: 130 CVSATTNRPKYIIDNDAGGDDAMAILIAILSEKYFDGPELIALTTGHGNTDEEQVTINNQ 309
C A + K IIDND D + +L A+ +++ +++ +T +G+ +
Sbjct: 17 CAYAASAASKVIIDNDGLTD--LQVLFALQAKQ-----QILGVTAIYGDYTLDDSLFLAS 69
Query: 310 QILKLAG-RQDIPIYRGSAEALVSPFGN--VWY--YG-----------LDGLGDNNDSYT 441
+L IP + G+A+ L+ +W YG + NN+SY
Sbjct: 70 DVLSTGNLTYCIPSFAGAAQPLLRTNNTFQIWQELYGSYVWQGYWQPEYETANTNNESY- 128
Query: 442 DLFPPAEESAAFALIENSKKYEGSLSVVTIGTLTNIAVAMKYDPKFLDRLSHLYIGAGHL 621
+ SAA +I+ K +++V G +TN+A+A+ P L I G++
Sbjct: 129 --IYNTQISAAQFIIDMVKANPNEITIVAAGPMTNLAIALSIWPDLAKNTKSLVIMGGYV 186
Query: 622 YSK 630
S+
Sbjct: 187 DSQ 189
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 412 GLGDNNDSYTDLFPPAEESAAFALIENSKKYEGSLS 519
G +N+ TD++P A + AA A ++ + E SLS
Sbjct: 809 GYSENDIGGTDIYPFALQGAALAAAKDFSRREASLS 844
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = -1
Query: 675 GLYVHQGVEFGFWXFFAIQMSRSYIQMRKAVQKFRVVLHC 556
G+ + V W FF Q S + ++KA+ F ++ C
Sbjct: 179 GITIAYSVILALWMFFRFQYKHSIVTVQKAIM-FLLIFSC 217
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = -2
Query: 806 IILVSIAPQNIFLQLALKLQWSLACENGKIVT 711
+ ++++APQ+ FL + + L +LA ++ I+T
Sbjct: 424 VSVITLAPQHSFLNIVINLNPALALKSYTIIT 455
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 26.2 bits (55), Expect = 6.5
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = +1
Query: 607 GAGHLYSKEXPKPEFNALMDVEAYHVVMQKADPEKVTILPFSQARLHCNFSA 762
GA S+E N L D++ + + PEK I+P A L A
Sbjct: 108 GASQFPSREPASTAINKLSDLQPMASIWENIVPEKPAIIPPEVASLQDRLGA 159
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 6.5
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Frame = +1
Query: 220 SEKYFDGPELIALTTGHGNTDEEQVTINNQQILKLAGRQ-DIPIYRG--SAEALVS---P 381
S +F L +TT ++ + Q+++NN Q L RQ + G S AL+ P
Sbjct: 308 SPNFFFPTPLNIMTTTQDSSRDVQLSLNNVQSQALNNRQRRNQLLPGVPSTSALLDGRRP 367
Query: 382 FGNVWYYGLDGLGDNNDSYTDLFPPAEESAAFAL 483
V Y+G+ DN D + P EE F L
Sbjct: 368 ENVVDYHGIASFFDNFDKKINKL-PREEDILFGL 400
>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 725 HFHKQGSIATSVRVGEKCFGVLL 793
HFH+ GS++ V VG K ++L
Sbjct: 223 HFHQVGSVSDGVVVGSKIIDLIL 245
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 800 LVSIAPQNIFLQLALKLQWSLACENGKIVTFSGSAF 693
L S P+N QL +Q+S NG+++ S S+F
Sbjct: 352 LTSTGPKNTSKQLQGLVQFSSVSPNGELLLMSSSSF 387
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = -2
Query: 728 NGKIVTFSGSAFCITT**ASTSIKALNSGFGSSLLYK 618
NG +++ +G + + A +++KAL + +GSS LY+
Sbjct: 95 NGDLMSDNGKLDDLNSRAAYSALKALQNSYGSSHLYR 131
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -3
Query: 292 LAPRLCSRGPLSERSVL 242
LAP LCSR PL VL
Sbjct: 304 LAPELCSRAPLQTTDVL 320
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,538,183
Number of Sequences: 5004
Number of extensions: 73034
Number of successful extensions: 207
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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