Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_D23
         (912 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    24   1.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   8.9  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   8.9  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +1

Query: 115 LSICCCVSATTNRPKYIIDNDAGGDDAMAILIAILSEKYFDGPELIALTTGHGNTDEE 288
           +++  C +AT   P+      +GG D  A++ +   E  FDG  +    T +G + +E
Sbjct: 3   VAVVLCTTATLAAPQ----RPSGGADKDAVITSQQLEVNFDGNYINNFETSNGISHQE 56


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 6/28 (21%)
 Frame = +3

Query: 525 NHWNI----DEHCRG--NEVRPEIFGPP 590
           NH NI    D   RG  N VRP+  GPP
Sbjct: 2   NHSNISELLDNLLRGYDNSVRPDFGGPP 29


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 139  ATTNRPKYIIDNDAGGDDAMAILIAILSEKYFDGP 243
            ATT   + + +N+ G  D    +  I +E+   GP
Sbjct: 945  ATTYHLRIVAENEIGASDPSDTVTIITAEEAPSGP 979


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 424 NNDSYTDLFPPAEESAAFALIENSKKYE 507
           +N +YT L    +    F  + N +KYE
Sbjct: 578 DNQTYTSLQMAMKNPIEFTDLSNERKYE 605


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 668 TSIKALNSGFGSSLLYK-CPAPIYKCERRSK 579
           TSI  L  G+G+ ++Y    A + K ++  K
Sbjct: 478 TSINVLGDGYGAGIVYHLSKAELDKMDKEKK 508


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,682
Number of Sequences: 438
Number of extensions: 4951
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)