Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_D19
         (982 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    41   2e-04
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    37   0.004
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.3  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    28   2.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.3  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    24   5.2  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   9.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   9.3  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    26   9.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 14/20 (70%), Positives = 14/20 (70%)
 Frame = -2

Query: 951 PPPPPPXXXGGXXPPPPPPP 892
           PPPPPP    G  PPPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 14/20 (70%), Positives = 14/20 (70%)
 Frame = -2

Query: 951 PPPPPPXXXGGXXPPPPPPP 892
           PPPPPP   G   PPPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782



 Score = 35.9 bits (79), Expect = 0.009
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -1

Query: 700 PPPPPXXXXGGGGGXXXPPPPPP 632
           PPPPP      G G   PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 33.9 bits (74), Expect = 0.035
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -2

Query: 951 PPPPPPXXXGGXXPPPPPP 895
           P PPP    GG  PPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPP 768



 Score = 33.5 bits (73), Expect = 0.046
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -2

Query: 948 PPPPPXXXGGXXPPPPPPP 892
           P PPP    G  PPPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPP 768



 Score = 29.1 bits (62), Expect = 1.0
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = -1

Query: 700 PPPPPXXXXGGGGGXXXPPPPPPXXXXXXXXXXXXKTPPP 581
           P PPP    GG      PPPPPP              PPP
Sbjct: 750 PVPPPAPIMGG------PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = -1

Query: 649 PPPPPPXXXXXXXXXXXXKTPPPXFFFFXXXXPXPP 542
           PPPPPP              PPP         P PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 659 PPPPPPXGXXGGG 697
           PPPPPP G  G G
Sbjct: 762 PPPPPPPGVAGAG 774



 Score = 26.2 bits (55), Expect = 7.1
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 633 GGGGGGXXXPPPPPXXXXGGG 695
           G  G G   PPPPP     GG
Sbjct: 769 GVAGAGPPPPPPPPPAVSAGG 789


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 37.1 bits (82), Expect = 0.004
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = -2

Query: 951 PPPPPPXXXGGXXPPPPPPP 892
           PPPPPP       PPPPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30



 Score = 33.9 bits (74), Expect = 0.035
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -2

Query: 951 PPPPPPXXXGGXXPPPPPPP 892
           PPPPPP        PPPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -1

Query: 697 PPPPXXXXGGGGGXXXPPPPPP 632
           PPPP    G       PPPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -1

Query: 700 PPPPPXXXXGGGGGXXXPPPPPP 632
           PPPPP     G      PPPPPP
Sbjct: 10  PPPPPPP---GFEPPSQPPPPPP 29



 Score = 22.2 bits (45), Expect(2) = 7.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 661 GXXXPPPPPP 632
           G   PPPPPP
Sbjct: 7   GNPPPPPPPP 16



 Score = 21.8 bits (44), Expect(2) = 7.6
 Identities = 8/24 (33%), Positives = 9/24 (37%)
 Frame = -1

Query: 646 PPPPPXXXXXXXXXXXXKTPPPXF 575
           PPPPP              PPP +
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGY 32


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +3

Query: 633 GGGGGGXXXPPPPPXXXXGGGG 698
           GG GGG   PPP P    G GG
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGG 212



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 893 GGGGGGGXXPPXXXGGGGG 949
           GG GGG   PP   GG GG
Sbjct: 191 GGFGGGSGGPPPGPGGFGG 209



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 893 GGGGGGGXXPPXXXGGGGGG 952
           G GGG G  PP   G GG G
Sbjct: 192 GFGGGSGGPPPGPGGFGGFG 211


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
 Frame = -2

Query: 951  PPPP--PPXXXGGXXPPPPPPP 892
            PPPP  PP   G    PPPP P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLP 1736


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -2

Query: 924 GGXXPPPPPPP 892
           GG  PPPPPPP
Sbjct: 303 GGLPPPPPPPP 313



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -1

Query: 688 PXXXXGGGGGXXXPPPPPP 632
           P       GG   PPPPPP
Sbjct: 295 PSSGDSANGGLPPPPPPPP 313


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 7/30 (23%)
 Frame = -1

Query: 700 PPPPPXXXXGGGG-------GXXXPPPPPP 632
           PPPPP       G       G   PPPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 9/29 (31%)
 Frame = -2

Query: 951 PPPPPPXXXG---------GXXPPPPPPP 892
           PPPPPP             G   PPPPPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 26.2 bits (55), Expect = 7.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -2

Query: 951 PPPPPPXXXGGXXPPPPPPP 892
           PPP PP   G    PP  PP
Sbjct: 253 PPPIPPPSNGTVSSPPNSPP 272



 Score = 26.2 bits (55), Expect = 7.1
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 10/30 (33%)
 Frame = -2

Query: 951 PPPPPPXXXGGXXPP----------PPPPP 892
           PPPPPP       PP          PPPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 10/30 (33%)
 Frame = -2

Query: 951 PPPP-------PPXXXGGXX---PPPPPPP 892
           PPPP       PP   G      PPPPPPP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 23.8 bits (49), Expect(2) = 5.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 912 PPPPPPP 892
           PPPPPPP
Sbjct: 371 PPPPPPP 377



 Score = 21.0 bits (42), Expect(2) = 5.2
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 951 PPPPPP 934
           PPPPPP
Sbjct: 370 PPPPPP 375


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 942 PPPXXXGGXXPPPPPPP 892
           P P   G   PPPPP P
Sbjct: 347 PTPQVQGSRPPPPPPMP 363


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -2

Query: 951 PPPPPPXXXGGXXPPPPP 898
           PPPPPP        P PP
Sbjct: 5   PPPPPPAPAPAAAAPAPP 22


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 73  N*PVKYPNFLPGXKHLVFFGTVXERNWK 156
           N  +++  FLPG K L ++G   ER  K
Sbjct: 510 NWEMEFKKFLPGFKILTYYGNPQERKEK 537


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,206
Number of Sequences: 5004
Number of extensions: 37932
Number of successful extensions: 516
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 505288058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)