Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_D16
         (903 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0844 - 6411121-6411129,6411671-6411796,6411980-6412043,641...    31   0.95 
03_01_0658 + 4818401-4818540,4818605-4819201,4819694-4819949,482...    28   8.8  

>06_01_0844 - 6411121-6411129,6411671-6411796,6411980-6412043,
            6412568-6412695,6412855-6412971,6414936-6415475,
            6415554-6417344,6418359-6421407,6421765-6421823,
            6422738-6422791
          Length = 1978

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = +3

Query: 603  KFILGPLLSFSLDSETQSQLGKLLNNIAVSLQEVFEAQGTILMTSYI 743
            K  + PL  + LD +TQSQ G+LL   A++L ++F+ +G    T  +
Sbjct: 1740 KNAIAPLSMYLLDPQTQSQQGRLL--AALALGDLFQNEGLARSTDAV 1784


>03_01_0658 +
           4818401-4818540,4818605-4819201,4819694-4819949,
           4820038-4820723,4821009-4821147,4821378-4821514,
           4821805-4822077,4822175-4822382,4822660-4822731,
           4823230-4823460,4824269-4824532,4825127-4825268,
           4825355-4825467
          Length = 1085

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +2

Query: 110 ASAVAFGENLDPADDPKKHQKTLSELRLELHS*IFLKKFSMSISKGTCTRSTT 268
           A   A G+N+    +P+  + T++ L  E HS +  +   +   +GT T+  +
Sbjct: 783 AYITATGKNISSLPEPQSLEVTINSLICEKHSRLLQRPLDLVCKRGTITQKAS 835


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,106,283
Number of Sequences: 37544
Number of extensions: 334858
Number of successful extensions: 683
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)