Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_D13
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...   108   1e-24
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...   107   2e-24
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    31   0.22 
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    27   2.8  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    27   3.6  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   4.8  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  108 bits (259), Expect = 1e-24
 Identities = 47/82 (57%), Positives = 62/82 (75%)
 Frame = +2

Query: 326 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMS 505
           RWP KS +F   LL+NAE+NA+ K LD+D+L+I H+QVN AP  RRRTYRAHGR+  Y+S
Sbjct: 82  RWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLS 141

Query: 506 SPCHIEVCLSEREDAVARVAPT 571
           SP HIE+ ++E E+AV +   T
Sbjct: 142 SPSHIEIIVAEEEEAVPKANDT 163



 Score = 66.9 bits (156), Expect = 4e-12
 Identities = 30/56 (53%), Positives = 38/56 (67%)
 Frame = +1

Query: 154 HFKHTXAPAMAIRXLPLRRAVRYLKNVIEKKXCIPFRRFNGGVGRCAQAKQFGTTQ 321
           HFK++   A  I  + L++A  +L NV E K  +PFRRFNGGVGR AQ K+FG TQ
Sbjct: 25  HFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVTQ 80


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score =  107 bits (258), Expect = 2e-24
 Identities = 47/82 (57%), Positives = 61/82 (74%)
 Frame = +2

Query: 326 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMS 505
           RWP KS  F   LL+NAE+NA+ K LD+D+L+I H+QVN AP  RRRTYRAHGR+  Y+S
Sbjct: 82  RWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLS 141

Query: 506 SPCHIEVCLSEREDAVARVAPT 571
           SP HIE+ ++E E+AV +   T
Sbjct: 142 SPSHIEIIVAEEEEAVPKANDT 163



 Score = 66.5 bits (155), Expect = 5e-12
 Identities = 30/56 (53%), Positives = 38/56 (67%)
 Frame = +1

Query: 154 HFKHTXAPAMAIRXLPLRRAVRYLKNVIEKKXCIPFRRFNGGVGRCAQAKQFGTTQ 321
           HFK++   A  I  + L++A  +L NV E K  +PFRRFNGGVGR AQ K+FG TQ
Sbjct: 25  HFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVTQ 80


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = +2

Query: 296 KQSSLAQHRXRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYR 475
           K  S +QH+   PK SA  LL +LR+      N TL++  +  D I      C +R+  R
Sbjct: 151 KLGSTSQHQIATPKSSAS-LLNILRSLHDEQKN-TLNISSVKQDRITEANPTCEKRKPSR 208

Query: 476 A 478
           +
Sbjct: 209 S 209


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +1

Query: 406 RGQASHRPHSGKSRALPTQTYIPCSRS---HQPLHVVSLPHRSMS 531
           + Q+     S K RA   +T +  ++S   HQ +H +S PH S S
Sbjct: 331 QAQSPFLKKSDKERANLNKTMVSINKSINIHQSIHEISCPHHSSS 375


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 314 QHRXRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVI 424
           +H   WP    EF+ + +++AE N+  +  D  +L+I
Sbjct: 4   EHHSPWPDSLKEFIGRCIQDAEENSQPELEDEVKLLI 40


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 319 VLCQTALLEHSDQRRR*SDGMEYTLSFQ 236
           ++C TA+L+H D  RR   G+ + L F+
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,409,541
Number of Sequences: 5004
Number of extensions: 43765
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)