Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_D13
         (902 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995...   128   8e-30
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433...   120   1e-27
02_05_1155 + 34519080-34519313,34519622-34519665,34519901-345199...    31   1.3  
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    29   5.1  
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696...    29   6.7  

>08_02_1361 -
           26398987-26399019,26399320-26399387,26399458-26399560,
           26399658-26399888,26400791-26400826,26400891-26400931,
           26401028-26401064,26401158-26401160
          Length = 183

 Score =  128 bits (308), Expect = 8e-30
 Identities = 60/95 (63%), Positives = 72/95 (75%)
 Frame = +2

Query: 299 QSSLAQHRXRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRA 478
           +S  +  + RWP KSA F+L LL+NAESNAD K LDVD L + HIQVN+A   RRRTYRA
Sbjct: 86  KSRQSNGQGRWPAKSARFILDLLKNAESNADVKGLDVDNLFVSHIQVNQAQKQRRRTYRA 145

Query: 479 HGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAP 583
           HGRINPYMSSPCH+E+ LSE+E+AV +   T  AP
Sbjct: 146 HGRINPYMSSPCHVELILSEKEEAVKKEPETTIAP 180



 Score = 58.4 bits (135), Expect = 7e-09
 Identities = 33/65 (50%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
 Frame = +1

Query: 112 LRNHAKRVVQTSXVHF-KHTXAPAMAIRXLPLRRAVRYLKNVIEKKXCIPFRRFNGGVGR 288
           LR H K +V    V    +T   A A+R LPL +A RYL++VI  K  IPFRR+ GGVGR
Sbjct: 22  LRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYLEDVIAHKQAIPFRRYCGGVGR 81

Query: 289 CAQAK 303
            AQ K
Sbjct: 82  TAQVK 86


>09_02_0105 -
           4337047-4337079,4337175-4337242,4337323-4337425,
           4337507-4337737,4339307-4339347,4339437-4339473,
           4339603-4339605
          Length = 171

 Score =  120 bits (290), Expect = 1e-27
 Identities = 55/78 (70%), Positives = 64/78 (82%)
 Frame = +2

Query: 326 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMS 505
           RWP KSA F+L LL+NAESNA+ K LDVD L + HIQVN+A   RRRTYRAHGRINPYMS
Sbjct: 83  RWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYMS 142

Query: 506 SPCHIEVCLSEREDAVAR 559
           SPCHIE+ LSE+E+ V +
Sbjct: 143 SPCHIELILSEKEEPVKK 160



 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 33/51 (64%), Positives = 38/51 (74%)
 Frame = +1

Query: 151 VHFKHTXAPAMAIRXLPLRRAVRYLKNVIEKKXCIPFRRFNGGVGRCAQAK 303
           VHFK+T   A AIR LPL +A RYL++VI  K  IPFRR+ GGVGR AQAK
Sbjct: 24  VHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAK 74


>02_05_1155 +
           34519080-34519313,34519622-34519665,34519901-34519973,
           34520895-34521043,34521698-34521859,34522301-34522360,
           34522716-34522776
          Length = 260

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 18/38 (47%), Positives = 19/38 (50%)
 Frame = +2

Query: 17  CXTTTGXPYXLCXFSLDDAIIXGSLLSGAGSPCAIMQS 130
           C T  G    +C  S  DAI  GS  S AGSPC I  S
Sbjct: 180 CLTVAG----ICEASTSDAIGSGSWHSNAGSPCPISNS 213


>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
            20319770-20319887,20320607-20320676,20320774-20320854,
            20320924-20320959,20321129-20321149,20321586-20321642,
            20321716-20321827,20321905-20322178,20322454-20322556,
            20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 335  KKSAEFLLQLLRNAE--SNADNKTLDVDRLVIDHIQVNRAPCLR 460
            K   EF  Q+ + +E  S  + + L +  + I H+  + APCLR
Sbjct: 1033 KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLSGSSAPCLR 1076


>09_04_0308 + 16567361-16568854,16568946-16569068,16569372-16569649,
            16570316-16571924,16572363-16573781
          Length = 1640

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 398  FCCQRLIQRSSITARGIRRISWASXPCVVPNCFA*AQRPTPP 273
            F C RL  +S+   RG+  I WA+   V P   A   +P  P
Sbjct: 1129 FNCHRLADKSNFKKRGLLGIEWAANGPVQPFIQAGPSKPKYP 1170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,105,460
Number of Sequences: 37544
Number of extensions: 343970
Number of successful extensions: 929
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)