Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_D08
(985 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0369 - 22760383-22760440,22761410-22761497,22761582-227616... 29 7.5
09_02_0468 - 9608922-9610061 29 7.5
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526... 29 7.5
06_02_0257 - 13533689-13533714,13533799-13533925,13534013-135341... 29 7.5
02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060 29 7.5
02_01_0381 - 2764331-2764342,2768966-2769907 29 7.5
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 26 8.0
09_04_0080 + 14393797-14393894,14395100-14395202,14395307-143954... 28 9.9
01_01_1134 + 8994315-8995892 28 9.9
>11_06_0369 -
22760383-22760440,22761410-22761497,22761582-22761649,
22761742-22761858,22761964-22762084,22762172-22762247,
22762336-22762435,22762524-22762615,22763514-22763664,
22764698-22764792,22764900-22765193
Length = 419
Score = 28.7 bits (61), Expect = 7.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 958 PPPPPPXXXXXGGGG 914
PPPPPP GGGG
Sbjct: 52 PPPPPPLMAALGGGG 66
Score = 28.3 bits (60), Expect = 9.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 957 PPPPPXXXXXGGGGG 913
PPPPP GGGGG
Sbjct: 53 PPPPPLMAALGGGGG 67
Score = 28.3 bits (60), Expect = 9.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 914 PPPPPXXXXXGGGGG 958
PPPPP GGGGG
Sbjct: 53 PPPPPLMAALGGGGG 67
>09_02_0468 - 9608922-9610061
Length = 379
Score = 28.7 bits (61), Expect = 7.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 958 PPPPPPXXXXXGGGG 914
PPPPPP GGGG
Sbjct: 347 PPPPPPATTSNGGGG 361
Score = 28.3 bits (60), Expect = 9.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 957 PPPPPXXXXXGGGGG 913
PPPPP GGGGG
Sbjct: 348 PPPPPATTSNGGGGG 362
Score = 28.3 bits (60), Expect = 9.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 914 PPPPPXXXXXGGGGG 958
PPPPP GGGGG
Sbjct: 348 PPPPPATTSNGGGGG 362
>08_01_0600 -
5262573-5262773,5262850-5262952,5263050-5263180,
5263263-5263312,5265266-5265725,5266349-5266708
Length = 434
Score = 28.7 bits (61), Expect = 7.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 958 PPPPPPXXXXXGGGG 914
PPPPPP GGGG
Sbjct: 3 PPPPPPQAGVAGGGG 17
>06_02_0257 -
13533689-13533714,13533799-13533925,13534013-13534121,
13534193-13534272,13534758-13534979,13536070-13536318,
13537032-13537484,13539834-13540556
Length = 662
Score = 28.7 bits (61), Expect = 7.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 958 PPPPPPXXXXXGGGG 914
PPPPPP GGGG
Sbjct: 66 PPPPPPSSAAAGGGG 80
>02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060
Length = 794
Score = 28.7 bits (61), Expect = 7.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 958 PPPPPPXXXXXGGGG 914
PPPPPP GGGG
Sbjct: 11 PPPPPPPPFGRGGGG 25
>02_01_0381 - 2764331-2764342,2768966-2769907
Length = 317
Score = 28.7 bits (61), Expect = 7.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 958 PPPPPPXXXXXGGGG 914
PPPPPP GGGG
Sbjct: 65 PPPPPPNQPSAGGGG 79
Score = 28.3 bits (60), Expect = 9.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 957 PPPPPXXXXXGGGGG 913
PPPPP GGGGG
Sbjct: 66 PPPPPNQPSAGGGGG 80
Score = 28.3 bits (60), Expect = 9.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 914 PPPPPXXXXXGGGGG 958
PPPPP GGGGG
Sbjct: 66 PPPPPNQPSAGGGGG 80
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 25.8 bits (54), Expect(2) = 8.0
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -1
Query: 955 PPPPPXXXXXGGGG 914
PPPPP GGGG
Sbjct: 370 PPPPPGAAGRGGGG 383
Score = 21.0 bits (42), Expect(2) = 8.0
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -1
Query: 958 PPPPPP 941
PPPPPP
Sbjct: 349 PPPPPP 354
>09_04_0080 +
14393797-14393894,14395100-14395202,14395307-14395427,
14396208-14396287,14396702-14396878,14396992-14397215,
14397881-14397887,14398807-14398888,14399188-14399384
Length = 362
Score = 28.3 bits (60), Expect = 9.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 957 PPPPPXXXXXGGGGG 913
PPPPP GGGGG
Sbjct: 344 PPPPPAGDEGGGGGG 358
Score = 28.3 bits (60), Expect = 9.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 914 PPPPPXXXXXGGGGG 958
PPPPP GGGGG
Sbjct: 344 PPPPPAGDEGGGGGG 358
>01_01_1134 + 8994315-8995892
Length = 525
Score = 28.3 bits (60), Expect = 9.9
Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Frame = -1
Query: 712 PPPXXXX--KKKXXXGGGEXPPPXXXXXFFFXXXXGGGGGXPPXF 584
PPP K K G PPP F GGGGG F
Sbjct: 200 PPPCEEEPVKMKISPGSSTFPPPLANSIFAAAPNRGGGGGGAAPF 244
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,677,171
Number of Sequences: 37544
Number of extensions: 422700
Number of successful extensions: 4195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3225
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2870111300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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