Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_D07
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...    29   0.88 
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    29   0.88 
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi...    27   3.6  
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc...    27   4.7  

>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 441 NLVNVXHTXNQAKAXTA*VIIKNCPY*EGTYFXKAXXXXEYLAXPXP 581
           +LV V HT ++AK   + V  ++ P  EG  F +     ++L  P P
Sbjct: 115 HLVGVTHTADEAKQMASEVEYEDGPDDEGNMFKRPGKLSDFLPPPYP 161


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 250 QHLHLPLPKWTATLFCFLSILECWWTADKPEA 155
           +H ++PLPK  A +FC    L C++T    E+
Sbjct: 822 KHQNIPLPKTCAAIFCGNDELVCFFTIKADES 853


>SPBC1539.01c |||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +3

Query: 126 TSFEKIWSSLASGLSAV 176
           +SFEKI+SS+ SGL AV
Sbjct: 159 SSFEKIYSSIVSGLVAV 175


>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 378 MKXYKTSLQGMPLLAXYLPSXNL 446
           +K   TS + MP+ A Y+PS NL
Sbjct: 34  LKHQSTSSKAMPVSAFYIPSFNL 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,612,145
Number of Sequences: 5004
Number of extensions: 43976
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)