Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_D05
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1 |Schiz...    46   8e-06
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    29   1.2  
SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc...    27   5.0  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   8.7  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    26   8.7  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    26   8.7  

>SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 46.0 bits (104), Expect = 8e-06
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +2

Query: 443 QFIPMEVITAPKYESICYHPSILPRHRGASSVNWTLIEGDTTCGFSIFWADD-GLDTGPI 619
           +F+P +++    Y  I  HPS+LP++RGA  V  T++ GD   G +I   D    D G  
Sbjct: 90  RFVPFKILNQLPYGGINIHPSLLPKYRGAGPVYSTILNGDRLAGVTIQTMDSKQFDKGKS 149

Query: 620 LLQ 628
           L Q
Sbjct: 150 LAQ 152


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 644 TIDDTVDTIYNKFLYPEGIKALAEAVNMVANGVAPKIKQSEEGATYXPAL 793
           T+D  V  IY+ F  PE + +  + +N++A  V  +  Q   G+T   +L
Sbjct: 472 TLDPIVGDIYSVFWEPEMLASAGQTMNILATEVVTQSLQQVLGSTVLVSL 521


>SPCC1919.09 |tif6||translation initiation factor
           eIF6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -2

Query: 645 VVG*LFCSNMGPVSKPSSAQNMEKPHV---VSPSIKVQLTDEAPRCLGKML 502
           ++G L C N   +  PSS  + E  H+   +   +K+Q  DE    LG ++
Sbjct: 58  IIGRLTCGNRKGLLVPSSTTDNELQHLRNSLPDPVKIQRVDERLSALGNIV 108


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -1

Query: 853  EVVQSQTSFAPIDQMSFRFEQSWXVSGALFRLFDFRSHTIRNHVDGFS 710
            E+++   SF  +D +   F  +  +S AL+R FD     +++ +D  S
Sbjct: 2043 ELLKISESFLIVDNLQNAFSVAM-LSDALYRKFDLADENLKHDIDFLS 2089


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 470 APKYESICYHPSILPRHRGASSVNWTLIEG 559
           AP+ ES  +  SI+  H GA S+  TL  G
Sbjct: 64  APEIESYIHDASIVISHAGAGSILQTLRSG 93


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 416 DLNVLPFCTQFIPMEVITAPKYESICYHPSI 508
           DLNV    + F+ + VI  PKY+   Y  ++
Sbjct: 194 DLNVSLAVSNFVNLIVIREPKYQKFAYGKAV 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,787,548
Number of Sequences: 5004
Number of extensions: 81739
Number of successful extensions: 224
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)