Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_D05
(928 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0306 + 28357321-28357446,28357551-28357748,28357828-283579... 53 4e-07
05_03_0240 + 10813886-10814060,10814164-10814275,10814901-108150... 46 6e-05
08_02_1153 + 24724469-24724811,24724910-24725021,24725661-247258... 45 1e-04
06_02_0201 - 12960493-12960606,12960727-12960853,12961100-129612... 34 0.18
02_04_0437 - 22938263-22938273,22938345-22938444,22938727-229389... 33 0.32
01_07_0048 - 40741101-40741109,40741110-40741185,40741691-407417... 30 2.3
12_02_0436 - 19076486-19076609,19076860-19076944,19077321-190774... 28 9.2
01_05_0096 + 18073573-18073839,18073890-18074294 28 9.2
>01_06_0306 +
28357321-28357446,28357551-28357748,28357828-28357930,
28358665-28358735,28358820-28358924,28359372-28359405,
28359616-28359716,28360300-28360343,28360360-28360432,
28360489-28360629,28360769-28360861
Length = 362
Score = 52.8 bits (121), Expect = 4e-07
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Frame = +2
Query: 389 LEQYKSVNADLNVLPFCTQFIPMEVITAPKYESICYHPSILPRHRGASSVNWTLIEGDTT 568
L K V +L + +P + P Y ++ HPS+LP +RGA+ V L +G
Sbjct: 112 LSDLKEVRPELCITAAYGNILPQRFLDIPPYGTVNIHPSLLPLYRGAAPVQRALQDGVEE 171
Query: 569 CGFSIFWADDGLDTGPILLQKSYPTTIDDTVDT-IYNKFLYPEGIKALAEAVNMVANGVA 745
G S+ + LD GP++ + + +D+ + L+ G K L + + +G A
Sbjct: 172 TGVSLAYTVRALDAGPVIASEKF--AVDEYIKAPELLAILFNLGSKLLLHELPSILDGTA 229
Query: 746 -PKIK-QSEEGATYXP 787
K K Q + T+ P
Sbjct: 230 KEKAKPQDDSKITHAP 245
>05_03_0240 +
10813886-10814060,10814164-10814275,10814901-10815077,
10815287-10815413,10815529-10815642
Length = 234
Score = 45.6 bits (103), Expect = 6e-05
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 7/133 (5%)
Frame = +2
Query: 317 AAQNGKPVYKYKSWRI--KGQVIPEVLEQYKSVNADLNVLPFCTQFIPMEVITAPKYESI 490
A NG PV + + +G E+L + + D +L + IP+E++ A +
Sbjct: 66 ARGNGIPVVVFPKLKSAPEGVSTDELLNGLRELRVDFILLAGYLKLIPVELVQAYPKSIL 125
Query: 491 CYHPSILPRHRGAS----SVNWTLI-EGDTTCGFSIFWADDGLDTGPILLQKSYPTTIDD 655
HPS+LP G V+ +I G G ++ + D+ DTG L Q+ P +D
Sbjct: 126 NIHPSLLPAFGGKGYYGLKVHKAVIASGARYSGPTVHFVDEHYDTGRTLAQRVVPVQAND 185
Query: 656 TVDTIYNKFLYPE 694
T + + + L+ E
Sbjct: 186 TPEQLATRVLHEE 198
>08_02_1153 +
24724469-24724811,24724910-24725021,24725661-24725837,
24726046-24726172,24726295-24726408
Length = 290
Score = 44.8 bits (101), Expect = 1e-04
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 7/133 (5%)
Frame = +2
Query: 317 AAQNGKPVYKYKSWRI--KGQVIPEVLEQYKSVNADLNVLPFCTQFIPMEVITAPKYESI 490
A NG PV + + +G I E+L + + D +L + IP+E++ +
Sbjct: 122 ARGNGIPVVVFPKSKSAPEGVSIDELLNALRELRVDFILLAGYLKLIPVELVQEYPKSIL 181
Query: 491 CYHPSILPRHRGAS----SVNWTLI-EGDTTCGFSIFWADDGLDTGPILLQKSYPTTIDD 655
HPS+LP G V+ +I G G ++ + D+ DTG L Q+ P +D
Sbjct: 182 NIHPSLLPAFGGKGYYGLKVHKAVIASGARYSGPTVHFVDEHYDTGRTLAQRVVPVLAND 241
Query: 656 TVDTIYNKFLYPE 694
T + + + L+ E
Sbjct: 242 TPEQLAARVLHEE 254
>06_02_0201 -
12960493-12960606,12960727-12960853,12961100-12961276,
12961864-12961975,12964141-12964144
Length = 177
Score = 33.9 bits (74), Expect = 0.18
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 5/115 (4%)
Frame = +2
Query: 365 KGQVIPEVLEQYKSVNADLNVLPFCTQFIPMEVITAPKYESICYHPSILPRHRGAS---- 532
KG E+L + + D +L ++ IP+E++ A HPS+LP G
Sbjct: 27 KGLSTNELLNTLRELRVDSILLASYSKLIPVELVQAYPRSIWNIHPSLLPAFGGKGYYGL 86
Query: 533 SVNWTLIEGDTT-CGFSIFWADDGLDTGPILLQKSYPTTIDDTVDTIYNKFLYPE 694
V+ ++ G ++ + D+ D G L Q+ +D ++ + + L+ E
Sbjct: 87 KVHKAVVASRARYSGPTVHFVDEHYDIGRTLAQRVVSMLANDILEQLATRVLHEE 141
>02_04_0437 -
22938263-22938273,22938345-22938444,22938727-22938908,
22938989-22939092,22939792-22939857,22940032-22940105,
22940241-22940309,22940902-22941028,22941740-22942971,
22943163-22943486,22943500-22943793
Length = 860
Score = 33.1 bits (72), Expect = 0.32
Identities = 53/204 (25%), Positives = 78/204 (38%), Gaps = 16/204 (7%)
Frame = +2
Query: 188 VAIIGQSTFAA-EVFKLIQRDGHEVVGVFTIPDKGN-REDPLATIAAQNGKPVYKYKSWR 361
+ + G +TF + F + +G +V G + P G+ R NG+PV K +
Sbjct: 245 ITVFGLNTFKCLQPFNVTISEGCQVDGFLSKPGPGSGRNSGDRQFFYVNGRPVDMPKVSK 304
Query: 362 IKGQVIPEVLEQYKSVNAD---LNVLPFCTQFIPMEVITAPKYESICY---HPSILPRHR 523
+ V E Y+S NA + VL FC +V AP I + H +L
Sbjct: 305 L-------VNELYRSSNAKQYPVAVLNFCIPTTSYDVNVAPDKRKIFFSSEHAILLSLRE 357
Query: 524 GASSVNWTL-----IEGDTTCGFSIFWADDGLDTGPILLQK---SYPTTIDDTVDTIYNK 679
G ++ I G + A DG D L +K S P DD +T +
Sbjct: 358 GIENLYCPQQCSFSINSVEDPGKEMDPAIDGSDEDMCLTEKENVSAPENDDDMDETDSDD 417
Query: 680 FLYPEGIKALAEAVNMVANGVAPK 751
+ PE K + VA G PK
Sbjct: 418 EVTPENQKVPSSVTTRVATGSTPK 441
>01_07_0048 -
40741101-40741109,40741110-40741185,40741691-40741741,
40742316-40742584
Length = 134
Score = 30.3 bits (65), Expect = 2.3
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 144 RQYH*LIMHQKKA*ELPLLAKVHLQLKFSNSSKETVMKLWVSSQFLTKA 290
R YH HQ + LP + K +L++K SN E VMK LT++
Sbjct: 81 RSYHHHHHHQFREPILPQIPKSYLRIKDSNMKVEVVMKYLAGKLGLTQS 129
>12_02_0436 -
19076486-19076609,19076860-19076944,19077321-19077486,
19078213-19078889,19079372-19079475,19079582-19079817
Length = 463
Score = 28.3 bits (60), Expect = 9.2
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 436 LHSIHTHGGDHGS*IREHLLPSEHFTQTSGSF 531
LH H+HG HG ++L FT G F
Sbjct: 165 LHHFHSHGAVHGCVTASNILIDNDFTARLGDF 196
>01_05_0096 + 18073573-18073839,18073890-18074294
Length = 223
Score = 28.3 bits (60), Expect = 9.2
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Frame = +2
Query: 278 PDKGNREDPLAT---IAAQNGKPVYKYKSWRIKGQVIPEVLEQYKSVNADLNVLPFCTQF 448
P K P A+ AA +GKP YK+ + +V+ V KSV A+ + F Q
Sbjct: 26 PPKAAAAPPAASEDQAAASSGKPKYKHDFYNGASEVVVTVFA--KSVAAEHVSVDFGEQM 83
Query: 449 --IPMEVITAPKYESICYHPSILPRHRGASSVNWTLIE 556
+ +EV+ A SI + + V WT +E
Sbjct: 84 LSVSVEVVPAKCRYSILPSKIEVRLAKADEQVTWTSLE 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,184,631
Number of Sequences: 37544
Number of extensions: 557554
Number of successful extensions: 1314
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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