Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_D05
         (928 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.0  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   9.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   9.1  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 809 HLIDWSKGGLALHNFVRXLDSSPGATSF 892
           H + W + GL LH+     +   GA++F
Sbjct: 22  HTVHWFRKGLRLHDNPSLREGLAGASTF 49


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 555 RVTLHAASPYFGRTTA*TPAPY 620
           RV L A SPYF      TP  +
Sbjct: 47  RVVLSACSPYFRELLKSTPCKH 68


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 473 PKYESICYHPSILPRHRGAS 532
           P Y    +HPS    HRG+S
Sbjct: 314 PSYHPHQHHPSQYHPHRGSS 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 250,395
Number of Sequences: 438
Number of extensions: 5502
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)