Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_D04
(921 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.05c |||signal recognition particle subunit |Schizosacch... 41 2e-04
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 33 0.057
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 33 0.075
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 30 0.40
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.70
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.6
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 28 2.1
SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma... 27 3.7
SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr... 27 4.9
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 27 4.9
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 26 8.6
>SPCC1682.05c |||signal recognition particle subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 41.1 bits (92), Expect = 2e-04
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Frame = +3
Query: 417 NNAENRLLYIPLLQAERAWAHAMQLRQEANTEPRKKFHLVSRLKKACAHGQMLLQLCEES 596
++ + R I L A+RA+ + LR ++ H + RLK+A G+ L+
Sbjct: 105 SSVDKRYAEILLFNADRAFQQFVFLRSS------QRRHALRRLKRADQFGKELVSFTNAF 158
Query: 597 GRCEARTVLEAGAYASWLRGVLLLELQQWREAADSLQRAR---IVLEQLCTALPADERIV 767
+ LEA A+A ++ G L E + W + + +R +VL+ L E+ V
Sbjct: 159 DCNDHIFYLEAIAFAKYIEGTLNYEKRDWEGSLSAFSISRLSFLVLQNKIDTLAEHEKSV 218
Query: 768 YDQKLEELKPSLRYCA 815
+ ++ +LRY A
Sbjct: 219 LGELQNQIDSNLRYVA 234
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 33.1 bits (72), Expect = 0.057
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = -3
Query: 757 SSAGKAVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSSQSC 578
SS+ + S SS+ + + S++S +SSS++ S + P +S+ +SH SS S
Sbjct: 167 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSS 226
Query: 577 KS 572
S
Sbjct: 227 SS 228
Score = 28.3 bits (60), Expect = 1.6
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = -3
Query: 757 SSAGKAVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSSQSC 578
SS+ + S SST S++S +SSS++ S + + +SS+ +S SS S
Sbjct: 137 SSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 196
Query: 577 KS 572
S
Sbjct: 197 SS 198
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 32.7 bits (71), Expect = 0.075
Identities = 21/75 (28%), Positives = 41/75 (54%)
Frame = -3
Query: 757 SSAGKAVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSSQSC 578
+S+ K+ S SST+ + + S+++ +SSS+ P S +++ + S+ ++ SS S
Sbjct: 359 TSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKS-----SSSSK 413
Query: 577 KSICPCAHAFFSRDT 533
S P + AF+ T
Sbjct: 414 SSSAPVSSAFYHNST 428
Score = 27.5 bits (58), Expect = 2.8
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -3
Query: 757 SSAGKAVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAP--ASSTVRASHLPLSSQ 584
SS+ + S SSTI + + S++ +SSS + S + +P +SST+ +S SS
Sbjct: 294 SSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSS 353
Query: 583 SCKS 572
S S
Sbjct: 354 SFSS 357
Score = 27.1 bits (57), Expect = 3.7
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -3
Query: 757 SSAGKAVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSS 587
SS+ +V S SS+ + ++ S +SSS S + +SST+ +S L SS
Sbjct: 183 SSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSS 239
Score = 26.2 bits (55), Expect = 6.5
Identities = 29/112 (25%), Positives = 52/112 (46%)
Frame = -3
Query: 757 SSAGKAVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSSQSC 578
SS S SST + + S++S +SSS++ S + + +S T +S + SS S
Sbjct: 238 SSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSS 297
Query: 577 KSICPCAHAFFSRDTR*NFFLGSVLAS*RSCMA*AHALSACSSGMYSNLFSA 422
S + S + + F S L+S S M+ + + S+ + S + S+
Sbjct: 298 SSPTSTSSTISSSSSSSSSF-SSTLSS--SSMSSSSSFSSSPTSSSSTISSS 346
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 30.3 bits (65), Expect = 0.40
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 545 QSRHKMKLFSRFSVSFLTQLHGMSPCPLGL 456
+SRH+ L + F ++HGM PC GL
Sbjct: 46 ESRHESDLIKSILLPFHNRIHGMLPCKQGL 75
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 29.5 bits (63), Expect = 0.70
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = -3
Query: 754 SAGKAVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAY-APASSTVRASHLPLSSQSC 578
S+ + S SS++L+ + +A S +SSS++P S ++ +PASS+ S + SSQ
Sbjct: 36 SSSSVIPSSSSSMLSSSSATAIS----SSSSSSPLSSSSFTSPASSSFITSLVSSSSQQS 91
Query: 577 KS 572
S
Sbjct: 92 SS 93
Score = 27.9 bits (59), Expect = 2.1
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = -3
Query: 757 SSAGKAVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTV----RASHLPLS 590
SS ++ S +S+ + + SAA+ +SSS P S + +SS +S PLS
Sbjct: 8 SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLS 67
Query: 589 SQSCKSICPCAHAFFS 542
S S S P + +F +
Sbjct: 68 SSSFTS--PASSSFIT 81
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.3 bits (60), Expect = 1.6
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = -3
Query: 766 TIRSSAGKAVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSS 587
++ SS+ A S +ST A S+ + SSS S + + ASS++ +S L SS
Sbjct: 84 SLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSS 143
Query: 586 QSCKSI 569
+ S+
Sbjct: 144 ITSSSL 149
Score = 25.8 bits (54), Expect = 8.6
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = -3
Query: 766 TIRSSAGKAVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSS 587
++ SS+ + SS+ LA + ++ + SSS T S + + ASS+ +S L SS
Sbjct: 74 SLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSS 133
Query: 586 QSCKSI 569
+ S+
Sbjct: 134 ITSSSL 139
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 156 SEIENGKVTAVENSDKKNE-KAPILLNLEIFRITRDSQQQHGLRHAD 293
+E+ + + ++ +K+N+ K +LL E R TR+ ++ LRHAD
Sbjct: 1025 NELSSHRNAEKQHLEKENDYKQQLLLVTEDLRKTREDYEKELLRHAD 1071
>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 318
Score = 27.1 bits (57), Expect = 3.7
Identities = 19/68 (27%), Positives = 27/68 (39%)
Frame = +3
Query: 441 YIPLLQAERAWAHAMQLRQEANTEPRKKFHLVSRLKKACAHGQMLLQLCEESGRCEARTV 620
Y E A A +++ T F + + AHGQ L E + +C A TV
Sbjct: 236 YYKSANGESALVSACKVKAVDTTAAGDTF--IGAFSNSIAHGQPLKDSLEFAAKCSAITV 293
Query: 621 LEAGAYAS 644
GA +S
Sbjct: 294 QRKGAASS 301
>SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 822 CCKHNNEDSASAPLASDRKQS 760
C KH N D+A++P+A+ QS
Sbjct: 166 CSKHRNLDAATSPIAAFSSQS 186
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/74 (14%), Positives = 35/74 (47%)
Frame = -2
Query: 383 TVMASVSLWYFEYFSQSSYAARTIATISLIISMSETMLLLTVSCYPKYF*VEEDGCLLIF 204
T+ + LW+F + + + ++ ++ ++ +VSC+ + + + ++F
Sbjct: 116 TLSSLPPLWFFSFLYYTDIGSTFFVLLAYDFALRKSAFSSSVSCFFSLWFRQTNIVWMVF 175
Query: 203 LIRIFYRCHLSIFN 162
+ ++ ++S FN
Sbjct: 176 IAVTYFASNMSFFN 189
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 8.6
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -3
Query: 640 AYAPASSTVRASHLPLSSQSCKSI--CPCAHAFFSRD 536
A AP +++R L++ SC+ I CP H FF D
Sbjct: 675 ASAPPDTSLRV--WDLNTGSCRDILKCPLGHIFFQHD 709
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,430,093
Number of Sequences: 5004
Number of extensions: 66552
Number of successful extensions: 276
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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