Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_D01
         (903 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0051 + 12863978-12864476,12864575-12864674,12865567-128656...    31   1.3  
09_03_0156 - 12844549-12845138,12845237-12845723                       31   1.3  
04_03_0513 - 16681227-16683936,16685572-16685966                       29   3.8  
03_02_0197 + 6337212-6337278,6339261-6340517,6340599-6340626,634...    29   3.8  

>11_04_0051 +
           12863978-12864476,12864575-12864674,12865567-12865657,
           12866114-12866176,12866364-12866549,12866994-12867024,
           12867054-12867502
          Length = 472

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 635 EKICYNYGIXKENEQFVMYANYSNSLTYPNNEDRIAYLTEDVGLXAYYYYF 787
           E+    + + + N +F+   N    LTY   E+  A LTE+  L  Y  Y+
Sbjct: 66  EEALQRFDVYRRNAEFIDAVNLRGDLTYQLAENEFADLTEEEFLATYTGYY 116


>09_03_0156 - 12844549-12845138,12845237-12845723
          Length = 358

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 635 EKICYNYGIXKENEQFVMYANYSNSLTYPNNEDRIAYLTEDVGLXAYYYYF 787
           E+    + + + N +F+   N    LTY   E+  A LTE+  L  Y  Y+
Sbjct: 62  EEALQRFDVYRRNAEFIDAVNLRGDLTYQLAENEFADLTEEEFLATYTGYY 112


>04_03_0513 - 16681227-16683936,16685572-16685966
          Length = 1034

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +3

Query: 267  QQGLLHKHESLRKFHDDVQGRIPSQEFGILDLL 365
            Q G+LH+ ESL    +D+ G IP QE   LD L
Sbjct: 905  QLGMLHQLESLDLSSNDLSGEIP-QELASLDFL 936


>03_02_0197 +
           6337212-6337278,6339261-6340517,6340599-6340626,
           6340735-6340897
          Length = 504

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +1

Query: 289 MKAYENFMMMYKVGFLPKNLEFSIFYE-KMREEAIALFKLFYYAKDFECFYKTACYARVY 465
           +  Y  +  M   G +P  L++++F      +EA+    L +Y   F+     A +A  Y
Sbjct: 197 LNVYPYYDYMRSNGVIP--LDYALFRPLPPNKEAVDANTLLHYTNVFDAVVDAAYFAMAY 254

Query: 466 MNQGNVLIRLLHSYYP 513
           +N  NV + +  + +P
Sbjct: 255 LNVTNVPVMVTETGWP 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,334,877
Number of Sequences: 37544
Number of extensions: 384408
Number of successful extensions: 871
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)