Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_C19
         (890 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0386 + 8009884-8010133,8010274-8010338,8010545-8010658,801...    30   2.8  
01_01_0663 - 5059881-5060119,5060682-5060898,5061008-5061838,506...    29   3.8  
01_01_1139 - 9024609-9024708,9024832-9024910,9025083-9025252,902...    29   5.0  
01_06_1133 + 34781799-34782071,34782168-34783166,34783252-347836...    28   8.7  

>03_02_0386 +
           8009884-8010133,8010274-8010338,8010545-8010658,
           8010736-8010895,8010975-8011093,8011209-8011635,
           8011834-8012057,8012863-8012973,8013056-8013188,
           8013259-8013365,8013430-8013444,8013482-8013571,
           8013855-8013917,8013973-8014053,8014136-8014208,
           8014312-8014367,8014460-8014554,8014649-8014683,
           8015449-8015525
          Length = 764

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -2

Query: 613 KVKPLCYNHGFSYSVCLWEFGERPS 539
           KVK +C N GF Y  CL E    PS
Sbjct: 198 KVKDICKNLGFLYQCCLPEHARTPS 222


>01_01_0663 -
           5059881-5060119,5060682-5060898,5061008-5061838,
           5063560-5064120
          Length = 615

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 329 LLVYKVATLCTKNCMRLIMRAV 264
           LL+  VA LC K+CM+L+ R +
Sbjct: 203 LLILSVANLCNKSCMKLLERCL 224


>01_01_1139 -
           9024609-9024708,9024832-9024910,9025083-9025252,
           9025339-9025451,9025518-9025586,9025867-9025944,
           9026022-9026084,9026590-9026670,9027166-9027222,
           9027352-9027705
          Length = 387

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = +2

Query: 293 FLYKVSPLYTLVAYVAVGLFCYSILFVVFISVSCLVLREPIYGGCIASSLVSALMNFIFN 472
           FLYK+  +  +V Y AV LF Y +  V +  +  L LR  +  G   S++    MN +  
Sbjct: 186 FLYKLLKVIRIVPYSAVQLFSYEVYKVTY-PLDVLRLRLAVQSG--HSTMSQVAMNML-R 241

Query: 473 TQGLTT 490
            +GL +
Sbjct: 242 DEGLAS 247


>01_06_1133 +
           34781799-34782071,34782168-34783166,34783252-34783663,
           34783727-34784670
          Length = 875

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +3

Query: 600 RGLTLFTIAVIGRTMNILHDPNEDMNLISSIVLTALST---VGLLITGXCVISEKQRNIQ 770
           RGL    +  IGR   +L D +  + ++ S+ +T L T    G+      ++  K+RN+Q
Sbjct: 409 RGLVEMIVLNIGRDKEVLDDESFAVMVLVSVAMTTLVTPVVTGVYRPSRRLVGYKRRNLQ 468


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,571,110
Number of Sequences: 37544
Number of extensions: 401958
Number of successful extensions: 858
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)