Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_C19
         (890 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016413-4|AAM29683.1|  454|Caenorhabditis elegans Hypothetical ...    33   0.27 
AC006603-4|AAF39747.2|  379|Caenorhabditis elegans Hypothetical ...    31   1.5  
Z78410-3|CAB01641.1|  555|Caenorhabditis elegans Hypothetical pr...    30   2.6  
Z68116-11|CAA92176.1|  317|Caenorhabditis elegans Hypothetical p...    30   2.6  
Z68114-12|CAA92163.1|  317|Caenorhabditis elegans Hypothetical p...    30   2.6  
Z81062-6|CAB02949.2|  320|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF068709-5|AAC19250.2|  332|Caenorhabditis elegans Serpentine re...    29   3.4  

>AF016413-4|AAM29683.1|  454|Caenorhabditis elegans Hypothetical
           protein F27E11.2b protein.
          Length = 454

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
 Frame = +2

Query: 218 IGTRPISSNGLWCCALL---PALLISYNFLYKVSPLYTLVAYVAVGLFCYS-ILFVVFIS 385
           IGT P+ S   W C  L    A L+   ++ K++    + A V  G  C +  +F  +++
Sbjct: 276 IGTTPVESVNAWACTFLGMSEAPLMVAPYIEKLTD-SEIFAIVTSGFACVAGTVFTAYVA 334

Query: 386 VSCLVLREPIYGGCIASSLVSALMNFIFNTQGL 484
           +       PIY   + +SL+SA M+  +N  G+
Sbjct: 335 LGAC----PIY--LLTASLLSAPMSLAYNNLGI 361


>AC006603-4|AAF39747.2|  379|Caenorhabditis elegans Hypothetical
           protein B0524.2 protein.
          Length = 379

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +2

Query: 341 VGLFCYSILFVVFISVSCLVLREPIYGGCIASSLVSALMNFIFNTQGLTTSLSFSLT 511
           +G + +    ++F     L+ R   Y GC + SLV+A+  FIFN + L   +SF  T
Sbjct: 105 LGSYQFGAAKMIFDHGKKLMKRVERYSGCSSGSLVAAM--FIFNPEKLVFLVSFRKT 159


>Z78410-3|CAB01641.1|  555|Caenorhabditis elegans Hypothetical
           protein C51E3.6 protein.
          Length = 555

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 18/81 (22%), Positives = 39/81 (48%)
 Frame = +2

Query: 335 VAVGLFCYSILFVVFISVSCLVLREPIYGGCIASSLVSALMNFIFNTQGLTTSLSFSLTA 514
           V  G+F   +  +  I      + +P+ GG +ASS+   +   + N Q +  +LS ++  
Sbjct: 378 VMAGVFLIILGLITKIGALLSTIPDPLVGGVLASSMAMVVGVAVSNLQTVDMTLSRNM-G 436

Query: 515 VYLYSTMLRWSLTKFPKTYTI 577
           ++ +S M    + K+ K + +
Sbjct: 437 IFGFSMMFGLIVPKYFKLFPV 457


>Z68116-11|CAA92176.1|  317|Caenorhabditis elegans Hypothetical
           protein F17A2.8 protein.
          Length = 317

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = +2

Query: 371 VVFISVSCLVLREPIYGGCIASSLVSALMNFIFNTQGLTTSLSFSLTAVYL 523
           VV + ++CL+LR  I     ASS      N +F  QGLT  + F  T VY+
Sbjct: 195 VVIVPITCLLLRRKILKLLTASSDALYFQNRVF-LQGLTLQI-FGHTLVYV 243


>Z68114-12|CAA92163.1|  317|Caenorhabditis elegans Hypothetical
           protein F17A2.8 protein.
          Length = 317

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = +2

Query: 371 VVFISVSCLVLREPIYGGCIASSLVSALMNFIFNTQGLTTSLSFSLTAVYL 523
           VV + ++CL+LR  I     ASS      N +F  QGLT  + F  T VY+
Sbjct: 195 VVIVPITCLLLRRKILKLLTASSDALYFQNRVF-LQGLTLQI-FGHTLVYV 243


>Z81062-6|CAB02949.2|  320|Caenorhabditis elegans Hypothetical
           protein F15A4.7 protein.
          Length = 320

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +2

Query: 284 SYNFLYKVSPLYTLVAYVAVGLFCY-SILFVVFIS 385
           +Y+ L++ +  +    Y++VGLFC+ S+L ++ IS
Sbjct: 17  NYDILFENAIYFVTACYLSVGLFCHISLLKIILIS 51


>AF068709-5|AAC19250.2|  332|Caenorhabditis elegans Serpentine
           receptor, class t protein29 protein.
          Length = 332

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +2

Query: 245 GLWCCALLPALLISYNFLYKVSPLYTLVAYVAVGLFCYSIL-FVVFISVSCLVLREPI 415
           GLWCC+ + A+++  N L  +S   TL   +  G   Y ++ F +   +  +V   PI
Sbjct: 117 GLWCCSCIIAMILVMNRLLDLSK-STLSTLIFEGNRTYLVMSFTILYGLYFVVFTPPI 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,956,686
Number of Sequences: 27780
Number of extensions: 403374
Number of successful extensions: 1077
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)