Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_C15
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   6.4  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   6.4  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    26   6.4  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   8.5  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   8.5  

>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 546 PPDEHHKNRRSSQRWRSPDRTIKIPGVSPW 635
           P   HHK+  + +R  SP     IP  +PW
Sbjct: 442 PKSLHHKSSSAGERPVSPTFVADIPPKTPW 471


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 637 SSLVRSPVPTLPLTGYLSAFLPSGSVALLIXHAVGISVRCXSFAPSWAVC 786
           SS   S VP+      L+A   S   +L     VGI + C +FA   A+C
Sbjct: 261 SSSTSSEVPSSTAALALNASKASNHTSLNAGAIVGIVIGCVAFAVVMALC 310


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -2

Query: 717 RHASRREKGGQV---SGKRQGRNRRAHEGASR 631
           +   RRE+GG+V   SG+ + R+   HE  SR
Sbjct: 95  KRGGRRERGGRVHGDSGRLRSRSPSPHEARSR 126


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 675 YRIPVRLSPFGKRGASHXSRCRY 743
           YRIP R  PF   GA   + C +
Sbjct: 477 YRIPHRFEPFNSLGAQWCAHCGF 499


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +3

Query: 549 PDEHHKNRRSSQRWRSPDRTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKR 713
           P+E   N+ +S ++R     + + G++ +         DP  Y      +PFGK+
Sbjct: 50  PEEGSSNKSNSSKFRKRFLLLFLLGITGYSCSVVYCFKDPNFYDYFAEHTPFGKQ 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,189,594
Number of Sequences: 5004
Number of extensions: 60502
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)