Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_C15
         (907 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0061 - 16949038-16950006                                         30   2.9  
02_05_1171 + 34672997-34673122,34673500-34673595,34674126-346742...    29   6.7  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.9  
06_03_0218 + 18219956-18220555                                         28   8.9  
05_04_0302 - 20004802-20005360,20005412-20005623                       28   8.9  
01_05_0490 + 22672241-22674679                                         28   8.9  

>03_04_0061 - 16949038-16950006
          Length = 322

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 603 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGAS 722
           RT+K PG+   ++PRA+  + P  Y   VR +   +R AS
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSAS 294


>02_05_1171 +
           34672997-34673122,34673500-34673595,34674126-34674229,
           34674303-34674502,34674643-34674765,34674910-34674998,
           34675579-34675642,34675906-34676049,34676173-34676270,
           34676479-34676724,34676826-34676909,34677011-34677022
          Length = 461

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +1

Query: 436 IHRIRGITQERTCEQKASKRPGTVKRPRCWRFSIGSAPLTSITKIDAQV-RGGDHP 600
           ++ IR   +E   + +   RPG    PR W+       +  I  +  +V RGG HP
Sbjct: 23  VYPIRPECREDAAKTRFKPRPGLTLSPRRWKLLHNEEGVLDIAGMIKRVQRGGTHP 78


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 300 NESAN---ARGEAVCVLGALPLPRSLTRCAR 383
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 708 SRREKGGQVSG--KRQGRNRRAHEGASRGKRLVS 613
           +RRE+  + +G  KR+GR R    G  RGKR  S
Sbjct: 106 ARRERRLEAAGAEKREGRRRGGSSGGLRGKRRAS 139


>05_04_0302 - 20004802-20005360,20005412-20005623
          Length = 256

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
 Frame = +3

Query: 570 RRSSQRWRSPDRTIKIPGVSPWKLPRALSCS----DPAAYRIPVRLSPFGKRGASHXSRC 737
           R   +RWR   R    P V      R ++      +  A R+PVR    G+RGA   SR 
Sbjct: 133 RAGRRRWRPVRRKEARPMVVEADTVRPVAVEAAVVEARARRVPVRYDEAGRRGARKCSRR 192

Query: 738 RYLSSVXVVRSKLGCVHEPPPV 803
           R   +    R  L    E  PV
Sbjct: 193 RRWPTQREARPVLAKPDEARPV 214


>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
 Frame = +1

Query: 442 RIRGITQERTCEQKA-SKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGDHPTGL*RY 618
           R+  + +E   E+ A +  P    RPR    S+ S P T   + +  V    +P      
Sbjct: 446 RLDAVLEEMRVEEVAPAATPPPPARPRRRSRSVESLPRTEELEAEIVVEEIKYPLPSSSP 505

Query: 619 QAFPPGSSLVRSPVPTLPLTGYLSAFLPSGSV 714
             FPPG+     P+P  P T   S    SGSV
Sbjct: 506 AMFPPGTPPPPPPLP--PATAPRSKKKRSGSV 535


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,985,177
Number of Sequences: 37544
Number of extensions: 494241
Number of successful extensions: 1557
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1556
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)