Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_C13
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0348 - 16890842-16890925,16890942-16891019,16891079-168912...    29   5.0  
06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078...    29   5.0  
06_03_0426 + 20667639-20667938                                         29   6.6  

>09_04_0348 -
           16890842-16890925,16890942-16891019,16891079-16891266,
           16891414-16891537
          Length = 157

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/67 (19%), Positives = 29/67 (43%)
 Frame = -3

Query: 842 CQEDPAXSXSCPTALRSPEAFTIVPSSKASLNWRL*MKNRTSFSYLAGWKNHCSLVLSAL 663
           C++  +   +CP      + +T+V  ++  LN       +   SY+  +   C  + +  
Sbjct: 50  CEDLDSIELTCPLCRGEVKGYTLVEPAREQLNQNKRSCMQDGCSYMGSYGELCKHMEATF 109

Query: 662 LPPYTTR 642
           +P +T R
Sbjct: 110 IPEFTAR 116


>06_02_0187 +
           12805788-12807007,12807059-12807186,12807811-12807859,
           12808508-12808853
          Length = 580

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = -3

Query: 302 LSMIRLLTTFWMMEPLPWL-----SYSKL*RTALS*SPVRMLLYSFSSRSWLEVSADSST 138
           L+++ L+   W + P   L     + S      L  SP   +  SF S +    S D++T
Sbjct: 36  LALLTLIMALWQLHPYQPLVLLPAALSSSPCPLLPRSPTSGIAVSFLSTAAATNSTDTAT 95

Query: 137 TPALAASMHIANTTR 93
            P   A+  +A TTR
Sbjct: 96  VPTTTAAARVAATTR 110


>06_03_0426 + 20667639-20667938
          Length = 99

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = -3

Query: 176 SRSWLEVSADSSTTPALAASMHIANTTRSFILLGAFQDRLQVCQN 42
           SR++L  S   S + A+AAS  +   +R   LL  +QDR Q+C++
Sbjct: 50  SRTFLLWSLKVSRSYAMAASSAVLKVSRVVKLLRWWQDREQLCRS 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,693,825
Number of Sequences: 37544
Number of extensions: 438327
Number of successful extensions: 1269
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)