Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_C12
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr 3|...    33   0.036
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr...    28   1.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.2  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   7.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   9.6  

>SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 109

 Score = 33.5 bits (73), Expect = 0.036
 Identities = 20/43 (46%), Positives = 25/43 (58%)
 Frame = +3

Query: 219 CAQCHTG*SWVANTKSXTRIYMGFLLXRKTGQAAGFSYXDSXK 347
           CAQCHT     AN K    ++  F   RKTGQA GFSY ++ +
Sbjct: 19  CAQCHTVEKGGAN-KVGPNLHGVF--GRKTGQAEGFSYTEANR 58


>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +3

Query: 729 KKNFXPPPXXKKXXXGXXKKXPPPP 803
           K NF PPP  +        K PPPP
Sbjct: 187 KNNFRPPPLVESSVVRIEPKNPPPP 211


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 744 PPPXXKKXXXGXXKKXPPPPPP 809
           PPP       G     PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 71  TIHVVSIKCLKFGDFGRPKKFGCYINYKN 157
           TI   S+ CL F     PK F C   YKN
Sbjct: 115 TIDFTSLPCLIFETLLNPKLFTCKNIYKN 143


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
 Frame = +3

Query: 744 PPPXXK--KXXXGXXKKXPPPPPP 809
           PPP  +         KK PPPPPP
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPP 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,985
Number of Sequences: 5004
Number of extensions: 43476
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)