Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_C12
(810 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1669 + 28499143-28499409,28499915-28500055,28500528-285006... 31 0.82
05_04_0348 + 20485884-20485995,20486818-20486951,20487668-20487760 31 1.1
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082... 29 4.4
03_05_1150 - 30758981-30759778,30759970-30760729,30760823-307609... 29 4.4
02_05_0002 - 24849189-24849825,24850267-24850328 29 4.4
07_03_1382 - 26170563-26170631,26171151-26171843 29 5.8
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 29 5.8
02_05_0686 - 30900748-30902167,30903442-30904742 29 5.8
02_04_0382 - 22501041-22501279,22501717-22501810 29 5.8
>07_03_1669 +
28499143-28499409,28499915-28500055,28500528-28500659,
28501185-28501373,28501503-28501580,28502267-28502386,
28502701-28502818,28503012-28503280,28503428-28503622,
28503737-28503879,28504096-28504180,28504270-28504479,
28504559-28504711,28504862-28504966,28505044-28505235
Length = 798
Score = 31.5 bits (68), Expect = 0.82
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +2
Query: 47 LMSCDSNATIHVVSIKCLKFGDFGRPKKFGCYINYKNLKWVYLAGNAENGKKIFVQRMCP 226
L + ++ A IH V + + +GR + C + YL+ E GK Q+M
Sbjct: 148 LAAAETLAAIHKVDVTAIGLQKYGRRDNY-CKRQVERWGRQYLSSTGE-GKPARYQKMLD 205
Query: 227 VPHWLK 244
+ HWLK
Sbjct: 206 LAHWLK 211
>05_04_0348 + 20485884-20485995,20486818-20486951,20487668-20487760
Length = 112
Score = 31.1 bits (67), Expect = 1.1
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Frame = +3
Query: 189 KMERKFLYNECAQCHTG*SWVANTKSXTRIYMGFLLXRKTGQAAGFSYXDSXKLRAFMGM 368
K K +CAQCHT + + + L R++G G+SY + K A +
Sbjct: 13 KAGEKIFKTKCAQCHTVDKGAGHKQGPN---LNGLFGRQSGTTPGYSYSTANKNMAVIWE 69
Query: 369 TPPX*NF-GNPKKXSLEPKRVLXGPQKGKXR 458
++ NPKK K V G +K + R
Sbjct: 70 ENTLYDYLLNPKKYIPGTKMVFPGLKKPQER 100
>05_03_0496 +
14706959-14707020,14707173-14707538,14708070-14708209,
14708319-14708566,14708814-14708946,14709096-14709159,
14709284-14709380,14709505-14709607,14709702-14709838,
14710063-14710152,14710240-14710401
Length = 533
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 695 FFFFFFFXXXXKXFFXFFXG 636
FFFFFFF FF FF G
Sbjct: 91 FFFFFFFFFFFFFFFFFFSG 110
>03_05_1150 -
30758981-30759778,30759970-30760729,30760823-30760920,
30761997-30762521
Length = 726
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 104 FGDFGRPKKFGCYINYKNLKWVYLAGNAENGKKIFVQRMCPVPHWLKL 247
+G G + FG + Y+NL W++LAG + R P W+ L
Sbjct: 574 WGLIGPARLFGRHGLYRNLVWLFLAGAVLPVPVWLLSRAFPEKKWIAL 621
>02_05_0002 - 24849189-24849825,24850267-24850328
Length = 232
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +3
Query: 723 KKKKNFXPPPXXKKXXXGXXKKXPPPPPP 809
+KKK P P G PPPPPP
Sbjct: 197 EKKKRKKPQPADTSGGGGHPHPPPPPPPP 225
>07_03_1382 - 26170563-26170631,26171151-26171843
Length = 253
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +3
Query: 723 KKKKNFXPPPXXKKXXXGXXKKXPPPPPP 809
K PPP G + PPPPPP
Sbjct: 177 KAAAQLGPPPPPPPQPSGDANENPPPPPP 205
>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1
Query: 745 PPPXXKXXXGGXXKKXPPPPP 807
PPP GG + PPPPP
Sbjct: 1196 PPPFCNSGYGGHPNQMPPPPP 1216
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 744 PPPXXKKXXXGXXKKXPPPPPP 809
PPP K K PPPPPP
Sbjct: 328 PPPPPKAAPPPPPPKGPPPPPP 349
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 744 PPPXXKKXXXGXXKKXPPPPPP 809
PPP K K PPPPPP
Sbjct: 337 PPPPPKGPPPPPPAKGPPPPPP 358
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 745 PPPXXKXXXGGXXKKXPPPPP 807
PPP GG K PPPPP
Sbjct: 83 PPPSPYYGGGGGYGKPPPPPP 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,357,331
Number of Sequences: 37544
Number of extensions: 386094
Number of successful extensions: 3667
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3004
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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