Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_C09
         (930 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical pr...    92   4e-19
AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal...    92   4e-19
AC084197-30|AAK68595.1|  303|Caenorhabditis elegans Exosome (mul...    31   0.89 
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   3.6  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   3.6  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   3.6  

>Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical
           protein C09H10.2 protein.
          Length = 105

 Score = 92.3 bits (219), Expect = 4e-19
 Identities = 49/106 (46%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
 Frame = +3

Query: 93  MVNVPKQRRTYXXXXXXXXXXXX-SQYKKSKXKARCPGXEDVMIVNSRXYGGQSKPIFXX 269
           MVNVPK RRT+             +QYKK K      G        S  +GGQ+KPIF  
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQS-GFGGQTKPIFRK 59

Query: 270 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 407
                  IVLR+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 60  KAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105


>AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal
           protein L44 L41 protein.
          Length = 105

 Score = 92.3 bits (219), Expect = 4e-19
 Identities = 49/106 (46%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
 Frame = +3

Query: 93  MVNVPKQRRTYXXXXXXXXXXXX-SQYKKSKXKARCPGXEDVMIVNSRXYGGQSKPIFXX 269
           MVNVPK RRT+             +QYKK K      G        S  +GGQ+KPIF  
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQS-GFGGQTKPIFRK 59

Query: 270 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 407
                  IVLR+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 60  KAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105


>AC084197-30|AAK68595.1|  303|Caenorhabditis elegans Exosome
           (multiexonuclease complex)component protein 2 protein.
          Length = 303

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 167 VQKVQGKGTLPRXRR--RYDRKQQGLRWSVQTHLQKEGKNH 283
           VQ+VQ  GTL    R  +Y + QQG+   V  HL K+ K H
Sbjct: 151 VQQVQHDGTLMLHTRNNKYGKLQQGILIKVPPHLIKKSKKH 191


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 799 PPFPGGGXXXLXXKKPPPPPP 737
           PP P GG   +    PPPPPP
Sbjct: 728 PPPPPGGLPPITGGPPPPPPP 748



 Score = 29.5 bits (63), Expect = 3.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 799 PPFPGGGXXXLXXKKPPPPPP 737
           PP P GG   +    PPPPPP
Sbjct: 744 PPPPPGGLPPISGGPPPPPPP 764


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 799 PPFPGGGXXXLXXKKPPPPPP 737
           PP P GG   +    PPPPPP
Sbjct: 728 PPPPPGGLPPITGGPPPPPPP 748



 Score = 29.5 bits (63), Expect = 3.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 799 PPFPGGGXXXLXXKKPPPPPP 737
           PP P GG   +    PPPPPP
Sbjct: 744 PPPPPGGLPPISGGPPPPPPP 764


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 799 PPFPGGGXXXLXXKKPPPPPP 737
           PP P GG   +    PPPPPP
Sbjct: 311 PPPPPGGLPPITGGPPPPPPP 331



 Score = 29.5 bits (63), Expect = 3.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 799 PPFPGGGXXXLXXKKPPPPPP 737
           PP P GG   +    PPPPPP
Sbjct: 327 PPPPPGGLPPISGGPPPPPPP 347


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,025,326
Number of Sequences: 27780
Number of extensions: 230249
Number of successful extensions: 1575
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1442
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)