Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_C07
         (895 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1396 + 29855256-29855328,29856019-29856180,29856466-298565...    54   2e-07
04_03_0165 - 12170813-12170831,12171324-12171625                       29   5.0  
10_01_0204 + 2199778-2200835,2201212-2201311                           29   6.6  

>06_03_1396 +
           29855256-29855328,29856019-29856180,29856466-29856516,
           29857189-29857277,29857632-29857709,29857811-29858014,
           29858101-29858172,29858262-29858306
          Length = 257

 Score = 54.0 bits (124), Expect = 2e-07
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
 Frame = +2

Query: 416 IQAGYPVEFFVGFINKGSVDYVVESMEASFRYPMDYTYYIQNFTALP-YNREVKPKQEAT 592
           + AG   E  VG  N+G     V ++ ++   P D+  Y QN T    +N  V    +AT
Sbjct: 80  VLAGEETELLVGLQNEGESTLNVVAIHSTLHLPFDHKMYGQNLTVQNFFNASVPVSVQAT 139

Query: 593 FAYSFIPNEAFAGRPFGLNVQLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFFL 763
           F Y+F  ++      + L   + Y +   N YQ   YN T+ +VE    L  E+ FL
Sbjct: 140 FPYTFAVSKFLQPGAYDLVGYIVY-EIDQNPYQNVFYNGTVEVVEAGGLLSVESVFL 195


>04_03_0165 - 12170813-12170831,12171324-12171625
          Length = 106

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -2

Query: 816 ACCPATRANTPP--APGKTYKKNVSPSRPSDTSTMLSVWL 703
           ACCPA   + PP  AP     +  +P  PS  +T  + WL
Sbjct: 12  ACCPAVAGSPPPHAAPAAGLPQR-TPRLPSAAATHAAAWL 50


>10_01_0204 + 2199778-2200835,2201212-2201311
          Length = 385

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 822 ARACCPATRANTPPAPGKTYKKNVSPSRPSDTSTMLSVW 706
           ARA    +RA   P+P  +    V P  P  +S+  +VW
Sbjct: 231 ARAGARVSRAGVRPSPASSILVGVHPCHPPSSSSSSTVW 269


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,695,420
Number of Sequences: 37544
Number of extensions: 464470
Number of successful extensions: 1137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)