Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_C07
         (895 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical ...   149   3e-36

>AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical
           protein Y71F9AM.6 protein.
          Length = 257

 Score =  149 bits (360), Expect = 3e-36
 Identities = 69/153 (45%), Positives = 97/153 (63%)
 Frame = +2

Query: 314 SLDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESM 493
           S +DD+  + +S D      F +P  S  ++  +   G PV++ +GF NKG  D+VV+  
Sbjct: 35  SQEDDDLTIGASPDAGLAFHFVQP--SDANVVREFYTGKPVKYLIGFQNKGEKDFVVKYA 92

Query: 494 EASFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNVQLNYRDA 673
           E SFR+P D++Y++QNFT   YNR V PK+E T  Y F  +E FAGRP GL V ++Y+DA
Sbjct: 93  ETSFRFPTDHSYHLQNFTRGEYNRRVAPKEEVTLDYGFYAHETFAGRPVGLVVNVHYQDA 152

Query: 674 SGNAYQEAVYNQTLNIVEVSEGLDGETFFLYVF 772
            GN +   VYNQT+NI+E   G  GET FL++F
Sbjct: 153 DGNVFVNNVYNQTINIMEDDSGFSGETGFLFIF 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,283,218
Number of Sequences: 27780
Number of extensions: 394874
Number of successful extensions: 1137
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)