Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_C06
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    28   1.7  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    26   6.7  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   8.9  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 365 SIYHCDRSFSNISNTIHSISFVNA 294
           S++    +FSNI++ IH ISF NA
Sbjct: 800 SLFRWSATFSNIADGIHRISFNNA 823


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -1

Query: 422 STTQGKTKIHKFTLTSYDLSIYHCDRSFSNISNTIHSISFVNAFFSSVS 276
           STT   + +   TLTS   S      S  +IS+TI S S   + F+S+S
Sbjct: 123 STTSSSSLVSSTTLTSSSPSAVSSTTSIPSISSTISS-SVSTSSFTSLS 170


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 395  HKFTLTSYDLSIYHC-DRSFSNISNTIH 315
            H FT+T+YD +I++   R+F + +  +H
Sbjct: 1112 HAFTITAYDSNIHNALTRAFKHENGDLH 1139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,271,591
Number of Sequences: 5004
Number of extensions: 39134
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)