Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_C02
         (960 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    31   0.93 
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    31   0.93 
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    31   0.93 
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    31   1.2  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    31   1.2  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    31   1.2  
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    29   6.5  
U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astaci...    28   8.6  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 29/117 (24%), Positives = 31/117 (26%), Gaps = 2/117 (1%)
 Frame = +1

Query: 469 PXXGGRGGXXREPTXDXPPXNKTAIXAXLXXPPPAXPPPXXRRXPXPTXXSXXXGGPXXP 648
           P   G G     P    PP  +T        PPP   PP       P         P  P
Sbjct: 247 PPLAGSGSPPPPPAAGSPPPPRTGSPP----PPPTGSPPPPPAGGSPPPPRAGSPPPPPP 302

Query: 649 PXXXPXXXSXQXAXXGXSXHPLRFLKXXXPXXXWXXAXRGAPTXGSXXV--XPXXRP 813
           P   P   S      G S  P        P      A   +P  GS      P  RP
Sbjct: 303 PRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRP 359


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 29/117 (24%), Positives = 31/117 (26%), Gaps = 2/117 (1%)
 Frame = +1

Query: 469 PXXGGRGGXXREPTXDXPPXNKTAIXAXLXXPPPAXPPPXXRRXPXPTXXSXXXGGPXXP 648
           P   G G     P    PP  +T        PPP   PP       P         P  P
Sbjct: 268 PPLAGSGSPPPPPAAGSPPPPRTGSPP----PPPTGSPPPPPAGGSPPPPRAGSPPPPPP 323

Query: 649 PXXXPXXXSXQXAXXGXSXHPLRFLKXXXPXXXWXXAXRGAPTXGSXXV--XPXXRP 813
           P   P   S      G S  P        P      A   +P  GS      P  RP
Sbjct: 324 PRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRP 380


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 29/117 (24%), Positives = 31/117 (26%), Gaps = 2/117 (1%)
 Frame = +1

Query: 469 PXXGGRGGXXREPTXDXPPXNKTAIXAXLXXPPPAXPPPXXRRXPXPTXXSXXXGGPXXP 648
           P   G G     P    PP  +T        PPP   PP       P         P  P
Sbjct: 253 PPLAGSGSPPPPPAAGSPPPPRTGSPP----PPPTGSPPPPPAGGSPPPPRAGSPPPPPP 308

Query: 649 PXXXPXXXSXQXAXXGXSXHPLRFLKXXXPXXXWXXAXRGAPTXGSXXV--XPXXRP 813
           P   P   S      G S  P        P      A   +P  GS      P  RP
Sbjct: 309 PRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRP 365


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/61 (31%), Positives = 19/61 (31%)
 Frame = +1

Query: 469 PXXGGRGGXXREPTXDXPPXNKTAIXAXLXXPPPAXPPPXXRRXPXPTXXSXXXGGPXXP 648
           P  GG       P    PP     I      PPP  PP      P P       GGP  P
Sbjct: 730 PPPGGLPPITGGPPPPPPPGGLPPISGG--PPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787

Query: 649 P 651
           P
Sbjct: 788 P 788


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/61 (31%), Positives = 19/61 (31%)
 Frame = +1

Query: 469 PXXGGRGGXXREPTXDXPPXNKTAIXAXLXXPPPAXPPPXXRRXPXPTXXSXXXGGPXXP 648
           P  GG       P    PP     I      PPP  PP      P P       GGP  P
Sbjct: 730 PPPGGLPPITGGPPPPPPPGGLPPISGG--PPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787

Query: 649 P 651
           P
Sbjct: 788 P 788


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/61 (31%), Positives = 19/61 (31%)
 Frame = +1

Query: 469 PXXGGRGGXXREPTXDXPPXNKTAIXAXLXXPPPAXPPPXXRRXPXPTXXSXXXGGPXXP 648
           P  GG       P    PP     I      PPP  PP      P P       GGP  P
Sbjct: 313 PPPGGLPPITGGPPPPPPPGGLPPISGG--PPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 370

Query: 649 P 651
           P
Sbjct: 371 P 371


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
 Frame = -2

Query: 662 GXXXGGXXGPPXXXDXXVGXGXRLXXGGGXAGG----GXXSXAXMAVLFXGGXSXVGSRX 495
           G   GG  G         G G     GGG AGG    G  S         GG S   +  
Sbjct: 243 GYATGGSSGGGYSSGGSSGGGYSTGGGGGYAGGGGGGGGSSGGYAGSSGGGGYSAPAAAP 302

Query: 494 XPPRPP 477
            PP PP
Sbjct: 303 PPPPPP 308


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
 Frame = -2

Query: 662 GXXXGGXXGPPXXXDXXVGXGXRLXXGGGXAGG----GXXSXAXMAVLFXGGXSXVGSRX 495
           G   GG  G         G G     GGG AGG    G  S         GG S   +  
Sbjct: 243 GYATGGSSGGGYSSGGSSGGGYSTGGGGGYAGGGGGGGGSSGGYAGSSGGGGYSAPAAAP 302

Query: 494 XPPRPP 477
            PP PP
Sbjct: 303 PPPPPP 308


>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 268 protein.
          Length = 881

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +1

Query: 505 PTXDXPPXNKTAIXAXLXXPPPAXPPPXXRRXPXP 609
           P    PP    +I      PPP  PPP  +  P P
Sbjct: 67  PPPPPPPPPLISILQQAPPPPPPPPPPTLKAPPPP 101


>U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astacin
           protease protein33 protein.
          Length = 644

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/60 (28%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
 Frame = +1

Query: 505 PTXDXPPXNKTAIXAXLXXPPP-AXPPPXXRRXPXPTXXSXXXGGPXXPPXXXPXXXSXQ 681
           P    PP ++         PPP   PPP  RR P           P  PP   P     Q
Sbjct: 37  PWGPPPPWHRNRGPPPFGPPPPWDRPPPPWRRPPWHRRPPWGLPPPPPPPEPEPQQDQPQ 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,205,222
Number of Sequences: 27780
Number of extensions: 129108
Number of successful extensions: 758
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2496624284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)