Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP20_F_B20
(906 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0080 + 587674-588510 30 0.072
09_02_0327 - 7284829-7284889,7284946-7286126 25 2.1
09_01_0016 - 376742-376883,377973-378964 25 2.1
02_05_0002 - 24849189-24849825,24850267-24850328 30 2.9
01_01_0083 + 631196-631675 30 2.9
07_03_1691 - 28726307-28726323,28726588-28726953,28727483-287275... 29 3.8
04_03_0977 + 21381857-21383757,21384299-21384458,21384669-213847... 29 3.8
02_05_0925 - 32768815-32769654 29 5.1
01_07_0021 - 40533864-40534583,40534779-40534814,40534909-405350... 25 5.8
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 24 7.0
04_04_0802 - 28155281-28155725,28155750-28156081,28156164-281562... 25 7.5
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365... 25 8.8
11_04_0009 - 12132781-12133272 28 8.9
01_05_0552 - 23173106-23173184,23173266-23173411,23173543-231740... 24 9.3
>07_01_0080 + 587674-588510
Length = 278
Score = 29.9 bits (64), Expect(2) = 0.072
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 901 PXXXXGGGXFXXXXPPPPPPP 839
P G G F PPPPPPP
Sbjct: 79 PPRLGGDGMFRRPPPPPPPPP 99
Score = 24.2 bits (50), Expect(2) = 0.072
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -3
Query: 859 PPPPPPPXXXKK 824
PPPPPPP ++
Sbjct: 115 PPPPPPPLFTRR 126
>09_02_0327 - 7284829-7284889,7284946-7286126
Length = 413
Score = 24.6 bits (51), Expect(2) = 2.1
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 874 FXXXXPPPPPPP 839
F PPPPPPP
Sbjct: 49 FGAHPPPPPPPP 60
Score = 24.2 bits (50), Expect(2) = 2.1
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -3
Query: 859 PPPPPPPXXXKK 824
PPPPPPP ++
Sbjct: 60 PPPPPPPPRGRR 71
>09_01_0016 - 376742-376883,377973-378964
Length = 377
Score = 24.6 bits (51), Expect(2) = 2.1
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 874 FXXXXPPPPPPP 839
F PPPPPPP
Sbjct: 57 FVAPPPPPPPPP 68
Score = 24.2 bits (50), Expect(2) = 2.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -3
Query: 859 PPPPPPPXXXKKK 821
PPPPPPP K+
Sbjct: 64 PPPPPPPQQNGKE 76
>02_05_0002 - 24849189-24849825,24850267-24850328
Length = 232
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 901 PXXXXGGGXFXXXXPPPPPPP 839
P GGG PPPPPPP
Sbjct: 206 PADTSGGGGHPHPPPPPPPPP 226
>01_01_0083 + 631196-631675
Length = 159
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3
Query: 840 GGGGGGGFXXXKXPPP 887
GGGGGGGF PPP
Sbjct: 97 GGGGGGGFNYPAPPPP 112
>07_03_1691 -
28726307-28726323,28726588-28726953,28727483-28727567,
28728255-28728387,28729793-28730328
Length = 378
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 901 PXXXXGGGXFXXXXPPPPPPP 839
P GGG PPPPPPP
Sbjct: 31 PSCGGGGGGAGPTPPPPPPPP 51
Score = 28.3 bits (60), Expect = 8.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 886 GGGXFXXXXPPPPPPPXXXKK 824
GGG PPPPPPP ++
Sbjct: 35 GGGGGAGPTPPPPPPPPHHRR 55
>04_03_0977 +
21381857-21383757,21384299-21384458,21384669-21384717,
21385117-21385169
Length = 720
Score = 29.5 bits (63), Expect = 3.8
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 886 GGGXFXXXXPPPPPPP 839
GGG + PPPPPPP
Sbjct: 93 GGGGWVQLPPPPPPPP 108
Score = 28.7 bits (61), Expect = 6.7
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 886 GGGXFXXXXPPPPPPP 839
GGG PPPPPPP
Sbjct: 94 GGGWVQLPPPPPPPPP 109
>02_05_0925 - 32768815-32769654
Length = 279
Score = 29.1 bits (62), Expect = 5.1
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3
Query: 883 GGXFXXXXPPPPPPP 839
GG F PPPPPPP
Sbjct: 149 GGRFDHHPPPPPPPP 163
>01_07_0021 -
40533864-40534583,40534779-40534814,40534909-40535048,
40535837-40535922,40536430-40536653,40536770-40536865,
40538766-40538833,40539945-40540055,40540799-40540955
Length = 545
Score = 25.4 bits (53), Expect(2) = 5.8
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3
Query: 859 PPPPPPPXXXKK 824
PPPPPPP +K
Sbjct: 534 PPPPPPPPMNRK 545
Score = 21.8 bits (44), Expect(2) = 5.8
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = -3
Query: 883 GGXFXXXXPPPPPP 842
G + PPPPPP
Sbjct: 528 GPPYPAPPPPPPPP 541
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 24.2 bits (50), Expect(2) = 7.0
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -3
Query: 886 GGGXFXXXXPPPPPPP 839
G G PPPPPPP
Sbjct: 705 GPGVPSAPPPPPPPPP 720
Score = 22.6 bits (46), Expect(2) = 7.0
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -3
Query: 859 PPPPPPPXXXKKK 821
P PPPPP KK
Sbjct: 748 PAPPPPPLMTGKK 760
>04_04_0802 -
28155281-28155725,28155750-28156081,28156164-28156266,
28156347-28156528,28156617-28156800,28156872-28156960,
28157634-28157710,28157837-28157927,28158230-28158430
Length = 567
Score = 25.4 bits (53), Expect(2) = 7.5
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 840 GGGGGGGFXXXKXPPPXXXXG 902
GGGGGGG + P P G
Sbjct: 49 GGGGGGGHRVVRRPNPPFLSG 69
Score = 21.4 bits (43), Expect(2) = 7.5
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +3
Query: 822 FFFXXXGGGGGGG 860
F GGGGGGG
Sbjct: 41 FLSPPLGGGGGGG 53
>07_03_0111 +
13535912-13535972,13536081-13536142,13536418-13536510,
13537577-13537649,13537876-13538265,13538337-13538404,
13539334-13539375,13540211-13540735,13540817-13540974,
13541078-13541636,13542438-13542500,13542579-13542680,
13542779-13543096,13543175-13543267,13543489-13543590,
13543678-13543782,13544190-13544323,13545097-13545280,
13545701-13545832,13546215-13546327,13546468-13546558,
13547138-13549339
Length = 1889
Score = 24.6 bits (51), Expect(2) = 8.8
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -3
Query: 859 PPPPPPPXXXK 827
PPPPPPP K
Sbjct: 124 PPPPPPPPSPK 134
Score = 21.8 bits (44), Expect(2) = 8.8
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -3
Query: 874 FXXXXPPPPPP 842
F PPPPPP
Sbjct: 121 FGPPPPPPPPP 131
>11_04_0009 - 12132781-12133272
Length = 163
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 224 RSSTWAREQRWSCSKPAPERRRRIGSLR 141
R W RE+R S + P +RRR+G R
Sbjct: 108 RGEAWRRERRDSKIESRPSQRRRVGGRR 135
>01_05_0552 -
23173106-23173184,23173266-23173411,23173543-23174022,
23174106-23174161,23175538-23175637,23175708-23175765,
23176163-23176278,23176915-23176974,23177297-23177383,
23178250-23178341,23178409-23178587,23178946-23179087,
23179655-23179706,23180241-23180473,23180569-23180745,
23180882-23181044,23181242-23181392,23181493-23181574,
23182193-23182332,23182499-23183013
Length = 1035
Score = 24.2 bits (50), Expect(2) = 9.3
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 840 GGGGGGGFXXXKXPP 884
GGGGGGG + PP
Sbjct: 111 GGGGGGGGGGSQQPP 125
Score = 22.2 bits (45), Expect(2) = 9.3
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +3
Query: 825 FFXXXGGGGGGG 860
F GGGGGGG
Sbjct: 102 FLRGGGGGGGGG 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,938,566
Number of Sequences: 37544
Number of extensions: 401903
Number of successful extensions: 14200
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7923
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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