Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_B19
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024812-3|AAF59551.1|  183|Caenorhabditis elegans Hypothetical ...   239   1e-63
U88166-2|AAO44911.1|  118|Caenorhabditis elegans Hypothetical pr...    29   5.8  
AF003135-9|AAK18985.3| 1146|Caenorhabditis elegans Guanylyl cycl...    29   5.8  
AC006835-1|AAF40015.2|  903|Caenorhabditis elegans Hypothetical ...    29   5.8  

>AC024812-3|AAF59551.1|  183|Caenorhabditis elegans Hypothetical
           protein Y54E10BR.5 protein.
          Length = 183

 Score =  239 bits (586), Expect = 1e-63
 Identities = 108/146 (73%), Positives = 128/146 (87%)
 Frame = +3

Query: 246 MIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFLTNYPEEPVRVGEIVVFKVEGRDIP 425
           MIWKG+MV+TGS+SP+VVVLSGSMEPAF+RGDLL LTN  E+PVRVG+I VFKVEGR+IP
Sbjct: 37  MIWKGMMVITGSDSPVVVVLSGSMEPAFYRGDLLLLTNDLEDPVRVGDITVFKVEGREIP 96

Query: 426 IVHRVLKLHEKNNGTVKFLTKGDNNSVDDRGLYAQGQLWLTKKDVVGRARGFLPYVGMVT 605
           IVHRV+K+HEK+    K LTKGDNN VDDRGLYA GQLWL++ DVVGR +G LPYVGMVT
Sbjct: 97  IVHRVIKVHEKSADNTKILTKGDNNQVDDRGLYAPGQLWLSRTDVVGRTKGLLPYVGMVT 156

Query: 606 IYMNEYPKFKFAVLACLAIYVLVHRE 683
           I MN+YPK K+AVLA L ++VL+H+E
Sbjct: 157 IIMNDYPKLKYAVLAFLGLFVLLHKE 182



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = +2

Query: 158 SLFDDVRRMNKRQFMYQVLSFGMIVSSAL 244
           ++F ++R+MN RQ  YQ L+F M+VSSAL
Sbjct: 8   AMFSEIRQMNIRQLFYQCLNFAMVVSSAL 36


>U88166-2|AAO44911.1|  118|Caenorhabditis elegans Hypothetical
           protein M01A12.3 protein.
          Length = 118

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 623 IFIHIYGDHSNIWQKSSC 570
           +FIH++GDH N+ +   C
Sbjct: 32  VFIHLFGDHLNVLEDDEC 49


>AF003135-9|AAK18985.3| 1146|Caenorhabditis elegans Guanylyl cyclase
           protein 17 protein.
          Length = 1146

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 173 VRRMNKRQFMYQVLSFGMIVSSALNDMERFDGSNRK*KP 289
           +R + +R     + SFG+I S  +     FD  NRK KP
Sbjct: 771 LRGLEQRSKEADIYSFGIICSEVITRSSAFDLENRKEKP 809


>AC006835-1|AAF40015.2|  903|Caenorhabditis elegans Hypothetical
           protein ZK993.2 protein.
          Length = 903

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +2

Query: 143 LTMLESLFDDVRRMNKRQFMYQVLSFGMIVSSALNDMERFDGSNRK*KPNSSSTVRQY 316
           L M++S+F   R++ +R  MY  L     +     ++++ + SN K K     T+ Q+
Sbjct: 246 LEMVKSIFTRNRKLRQRHLMYDQLEIQKYLD--FTELKKSENSNEKAKAMLQKTIDQF 301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,861,928
Number of Sequences: 27780
Number of extensions: 404964
Number of successful extensions: 904
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)