Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_B19
         (884 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   8.6  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              22   8.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   8.6  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/27 (33%), Positives = 10/27 (37%)
 Frame = -2

Query: 253 HIIQGRRHYHTKA*HLVHELPLVHSPH 173
           H      H H    H  H  PL HS +
Sbjct: 427 HATPHHHHSHAATPHHQHSTPLAHSSY 453


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 104 CLVIEXFPVADSCRQPTNPXVVKGAL 27
           C VI  F  + S R P+N  +V  A+
Sbjct: 76  CCVIWIFSTSKSLRTPSNMFIVSLAI 101


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 145 NNVGKSI**CAANEQAAVHVPSVKL 219
           N V K I  C+A   A +H+ S KL
Sbjct: 95  NEVNKLITECSAISDADIHLKSSKL 119


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 104 CLVIEXFPVADSCRQPTNPXVVKGAL 27
           C VI  F  + S R P+N  +V  A+
Sbjct: 76  CCVIWIFSTSKSLRTPSNMFIVSLAI 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,359
Number of Sequences: 438
Number of extensions: 4916
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)