Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_B16
         (882 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   8.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   8.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   8.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   8.6  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 379 LDTKKLLLRLSVLPRASDFYKIR 311
           LDTKK   ++S L   +D Y ++
Sbjct: 379 LDTKKWNNKISALRALNDLYNVK 401


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +2

Query: 572 NPNXNAXKKCFIXEIW 619
           NPN N  + C    IW
Sbjct: 117 NPNTNISEDCLYLNIW 132


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +2

Query: 572 NPNXNAXKKCFIXEIW 619
           NPN N  + C    IW
Sbjct: 117 NPNTNISEDCLYLNIW 132


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 168 SFDECMHIGEADSQQDNQQLVHFGY 94
           S D  + +   D+Q+DN Q++ + Y
Sbjct: 298 SKDSLVFVDNHDTQRDNPQILTYKY 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,139
Number of Sequences: 438
Number of extensions: 4539
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)