Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_B14
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    28   2.1  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    26   6.3  

>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 222 RTHHWDLKGLNVRFTARLASLCLRELLVSTTGLCLSACD 106
           R H  +L+ LN RFT     +   EL +S   L +SACD
Sbjct: 826 RQHLSELESLNQRFTEISERIPSAELEISKLQLDVSACD 864


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = -3

Query: 664 GQLVGELVPLQKIH*QHFARSLLLRSAYNPRHPSHRHRLYQHQRGDHFSFHLAGSHLQRL 485
           G++  E  PL++   Q  +RSLLL  + N    ++ H    + +  +F      +H+Q +
Sbjct: 295 GKVFRERKPLEEFAPQDISRSLLLAISNNIGQIAYLHAQKHNVQNIYFGGSFIRNHVQTM 354

Query: 484 ENYHRYQYAL 455
              H   YA+
Sbjct: 355 ---HTLTYAI 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,392,921
Number of Sequences: 5004
Number of extensions: 68712
Number of successful extensions: 200
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)