Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_B14
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    34   0.13 
12_02_1277 + 27497773-27500241                                         31   1.6  
05_06_0018 + 24966721-24968856                                         30   2.9  
10_08_0399 - 17614585-17614809,17614860-17615168                       29   6.6  
09_02_0288 + 6936867-6936879,6936965-6937038,6937445-6937588,693...    29   6.6  
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390...    29   6.6  

>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = -3

Query: 610 ARSLLLRSAYNPRHPSHRHRLYQHQRGDHFSFHLAGSHLQRLENYHRYQYALHLG*NQIP 431
           AR    +  ++  H  HRHR + H  GDH   H  G H QR  ++H   + +    +   
Sbjct: 526 ARRRHQKGRHHRHHHDHRHR-HGHSHGDH-HHHYHGGHHQRRRHHHPPAWDVEGHHHDRQ 583

Query: 430 SQSHWLGR 407
             SH  GR
Sbjct: 584 QHSHEAGR 591


>12_02_1277 + 27497773-27500241
          Length = 822

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
 Frame = -1

Query: 624 TSSILQDHF---FFGQRIILVTLRIVIAYI-SISEVTIFRFILLGPIFNGWRIITVTN 463
           TSSIL  ++    F   +ILVT +I+ A +  + +  IF  +LLG +   +R++++TN
Sbjct: 6   TSSILSANYNTILFEFGVILVTSKILYALLRKLYQPRIFSDLLLGIVLAQFRVLSLTN 63


>05_06_0018 + 24966721-24968856
          Length = 711

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 20/83 (24%), Positives = 36/83 (43%)
 Frame = +2

Query: 275 KCSPSRNPTVSRTVTHLAVVPWLMTPASKHW*SNKPSRAYLKRLAPEPMTLAWNLISSKM 454
           +C     P  +R   HL     +  PA+++W         LKR    P    WN++S   
Sbjct: 398 RCVRDDQPWTNRRHGHLWWKESITPPATRYWDDKVGQYVLLKRFGHRP----WNILS--- 450

Query: 455 ECILVTVIILQPLKMGPSKMKRK 523
               +T+ +++P + G  + +RK
Sbjct: 451 ---WLTLYLVEPRRQGQKRGRRK 470


>10_08_0399 - 17614585-17614809,17614860-17615168
          Length = 177

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +3

Query: 639 GTSSPTSCPFIAYARWNGIPRTH 707
           GTSS +S P  AY R  G P TH
Sbjct: 42  GTSSASSSPVEAYLRGGGAPPTH 64


>09_02_0288 +
           6936867-6936879,6936965-6937038,6937445-6937588,
           6937754-6937958,6938552-6938852,6938952-6939150,
           6939393-6939477,6939554-6939595,6939676-6939724,
           6939872-6939941,6940296-6940301
          Length = 395

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = +1

Query: 343 DDARFETLVVKQTKQSVLE---EARARANDSGLESDFIQDG-VHIG-NGDNSPTVEDG 501
           D+  F TLV +   + V E   +    A+D   ESDFI DG V +  +   S +V+DG
Sbjct: 76  DECSFLTLVRESYGEDVGESDTDQEFNASDDSYESDFIDDGDVEVSEDKSRSDSVDDG 133


>03_01_0520 -
           3900387-3900613,3900812-3900853,3902092-3902210,
           3903633-3903712,3903829-3903856,3904151-3904272,
           3904714-3904857,3904897-3906327
          Length = 730

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = -3

Query: 604 SLLLRSAYNPRHPSHRHRL-YQHQRGDHFSFHLA----GSHLQRLENYHRYQY 461
           S  L+  ++ ++  H H+  Y+HQ   HF  H        H    +N+H+ QY
Sbjct: 143 SFPLQQNHHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQHHNQNHHQQQY 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,479,852
Number of Sequences: 37544
Number of extensions: 471628
Number of successful extensions: 1199
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)