Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_B14
         (897 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical pr...    29   6.0  
Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical pr...    29   6.0  
AF025457-10|AAB70972.1|  148|Caenorhabditis elegans Hypothetical...    29   6.0  
U80814-2|AAB37993.1|  335|Caenorhabditis elegans Serpentine rece...    28   7.9  
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/...    28   7.9  
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/...    28   7.9  

>Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical
           protein M88.5b protein.
          Length = 704

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 22/77 (28%), Positives = 33/77 (42%)
 Frame = -3

Query: 661 QLVGELVPLQKIH*QHFARSLLLRSAYNPRHPSHRHRLYQHQRGDHFSFHLAGSHLQRLE 482
           Q   ++  +Q  H QH    ++ + A    HP  +++  QHQ G H   H    H  +  
Sbjct: 106 QQAQQMHQMQIHHQQH--PQMMQQHAQQGYHPHQQNQ--QHQAGQHQQSH----HQSQNH 157

Query: 481 NYHRYQYALHLG*NQIP 431
           N HR     H G + IP
Sbjct: 158 NQHRNHNQSHSGPHHIP 174


>Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical
           protein M88.5a protein.
          Length = 828

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 22/77 (28%), Positives = 33/77 (42%)
 Frame = -3

Query: 661 QLVGELVPLQKIH*QHFARSLLLRSAYNPRHPSHRHRLYQHQRGDHFSFHLAGSHLQRLE 482
           Q   ++  +Q  H QH    ++ + A    HP  +++  QHQ G H   H    H  +  
Sbjct: 230 QQAQQMHQMQIHHQQH--PQMMQQHAQQGYHPHQQNQ--QHQAGQHQQSH----HQSQNH 281

Query: 481 NYHRYQYALHLG*NQIP 431
           N HR     H G + IP
Sbjct: 282 NQHRNHNQSHSGPHHIP 298


>AF025457-10|AAB70972.1|  148|Caenorhabditis elegans Hypothetical
           protein C08E3.11 protein.
          Length = 148

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 282 EHFAVLLGCCDCHCTLYLLLRTH 214
           E +  LLGCC C    YL L TH
Sbjct: 85  ECYEPLLGCCVCWIIFYLPLNTH 107


>U80814-2|AAB37993.1|  335|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 8 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = -1

Query: 477 ITVTNMHSILDEIRFQARVIGSGASLF--KYALLGLF-DYQCFE--AGVINQGTTARWVT 313
           IT+TN+   +     Q R+I SG SLF   Y    LF +  CF+     ++  T A W+ 
Sbjct: 48  ITLTNIGVCITGFLLQERIIQSGKSLFYVSYGYCSLFGERLCFDIFGAYLHFHTHALWLL 107

Query: 312 VL 307
            L
Sbjct: 108 FL 109


>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           c protein.
          Length = 1510

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = +1

Query: 271 REMFAIKKSYSIENGYPSRRRSLVDDARFETLVVKQTKQSVLEEAR 408
           +++F   KS+   +G+P   +S  D  R +   V++T +++LE+ R
Sbjct: 40  QKVFETGKSFLRRDGFPQDCKSKEDFERIKRTGVRKTSENMLEDPR 85


>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           a protein.
          Length = 1507

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = +1

Query: 271 REMFAIKKSYSIENGYPSRRRSLVDDARFETLVVKQTKQSVLEEAR 408
           +++F   KS+   +G+P   +S  D  R +   V++T +++LE+ R
Sbjct: 40  QKVFETGKSFLRRDGFPQDCKSKEDFERIKRTGVRKTSENMLEDPR 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,830,595
Number of Sequences: 27780
Number of extensions: 389063
Number of successful extensions: 1147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)