Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_B14
         (897 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...   122   3e-30
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    27   0.31 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   2.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.9  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score =  122 bits (295), Expect = 3e-30
 Identities = 60/66 (90%), Positives = 63/66 (95%)
 Frame = +1

Query: 244 MAVAAAQKNREMFAIKKSYSIENGYPSRRRSLVDDARFETLVVKQTKQSVLEEARARAND 423
           MAVAAAQKNREMFAIKKSYSIENGYP+RRRSLVDDARFETLVVKQTKQSVLEEAR RAND
Sbjct: 2   MAVAAAQKNREMFAIKKSYSIENGYPARRRSLVDDARFETLVVKQTKQSVLEEARQRAND 61

Query: 424 SGLESD 441
           +GL  +
Sbjct: 62  AGLTEE 67



 Score = 55.2 bits (127), Expect = 8e-10
 Identities = 27/59 (45%), Positives = 35/59 (59%)
 Frame = +1

Query: 586 LTEEEVILQNXXXXXXXXXXXXXXXXXXXHMRDGMGSLARILKTIDNYKGCVQHLETRP 762
           LTEEEV+L                      +R+G+GSLARILKTI+N+KG V H+E+RP
Sbjct: 64  LTEEEVVLAKTIAECPESENTVQKAALVLRLREGIGSLARILKTIENFKGTVTHVESRP 122



 Score = 27.9 bits (59), Expect = 0.13
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +3

Query: 801 KVSMTPY*SYQLIRSLRQSTAFAGV 875
           KV MT     QLIR+LRQS+A  GV
Sbjct: 135 KVDMTRQYLLQLIRNLRQSSALDGV 159


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 71  WIANKTNAIKILRVPYNXRXWK 6
           W A++   I+++RVPYN R W+
Sbjct: 69  WNASEFAGIRVIRVPYN-RVWR 89


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 210  SGVSLEEDKEYNGSRSSPEEPRNVRHQEILQYRERLPIS 326
            SG+     +   G +S   +P+ V+ Q + +Y +  PIS
Sbjct: 921  SGIVASGQQHAGGWQSIYAQPQTVQDQIVSEYYQNKPIS 959


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 662 PFYCICAMEWDP 697
           PF C C+M+W P
Sbjct: 681 PFNCNCSMDWLP 692


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,399
Number of Sequences: 438
Number of extensions: 4815
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)