Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_B13
         (918 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    30   0.40 
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    29   0.92 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   4.9  

>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = +1

Query: 289 AVSGDFKKDIPEAVAEACGKCTPAQKHLFKRFLEVVKDKLPQEYEAFKTKYDP 447
           A S  FK DI E + ++      A  HL+ R  E ++ KLP+E E F  K++P
Sbjct: 106 AYSVVFKDDISEEMLKS------ALNHLYDRMTEALRFKLPEEDEVF-DKHEP 151


>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 329 TASGMSFLKSPETASQGDVSKKHPIKAFRES 237
           ++ G+ FL SPE A+Q  +S+KH   A  +S
Sbjct: 112 SSRGVHFLDSPELANQCGLSRKHIFDAVEDS 142


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 307  KKDIPEAVAEACGKCTPAQK-HLFKRFLEVVKDKLPQEYEAFKTKY 441
            KKD+   + E+C      ++ HL+K+F +V+   L    E   T++
Sbjct: 1302 KKDLEIEIEESCDFSIQTEEIHLYKKFKDVISSNLEFIVEIKNTRW 1347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,278,483
Number of Sequences: 5004
Number of extensions: 40822
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)