Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_B10
         (893 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024817-3|AAK68524.1|  482|Caenorhabditis elegans Hypothetical ...    31   0.84 
AC006671-6|AAF39916.1|  411|Caenorhabditis elegans Hypothetical ...    31   1.1  
Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical p...    30   1.9  
Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical p...    30   1.9  
U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromos...    30   1.9  
AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z98877-11|CAB63408.1|  887|Caenorhabditis elegans Hypothetical p...    29   3.4  
U41296-1|AAA93297.1|  579|Caenorhabditis elegans Steroid hormone...    29   3.4  
AY204170-1|AAO39174.1|  579|Caenorhabditis elegans nuclear recep...    29   3.4  
AF067936-1|AAC19212.2|  579|Caenorhabditis elegans Nuclear hormo...    29   3.4  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    29   5.9  
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p...    28   7.8  
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p...    28   7.8  
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/...    28   7.8  
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/...    28   7.8  
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ...    28   7.8  

>AC024817-3|AAK68524.1|  482|Caenorhabditis elegans Hypothetical
           protein Y54G2A.11a protein.
          Length = 482

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +1

Query: 523 PRDIGDSYEFKVPNKQADIILSVETTESNAKTYKDIVVPLVSHLIDSLKSKHITDVKVFL 702
           PR +   Y F+VP    D  L  + +E  +  +K+ V P +     S K KH+  ++  L
Sbjct: 206 PRPVPSDYLFEVPAFPEDFGLQRQNSEKRSDVWKEFVKPAMRKAPLSDKKKHLHMLRDIL 265

Query: 703 GR 708
            R
Sbjct: 266 RR 267


>AC006671-6|AAF39916.1|  411|Caenorhabditis elegans Hypothetical
           protein K08A2.1 protein.
          Length = 411

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 212 VPSGPQLSTGASARTLPSPAARCIPPPRLRTGLRGEYRRSGP 337
           VP+ P +++ + A   PSP A   PPPRL      E  ++ P
Sbjct: 262 VPTAPDVTSESPATPQPSPPAVTPPPPRLLPAATTESHQTEP 303


>Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical
            protein M106.1 protein.
          Length = 1244

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 310  SGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLG 438
            SGG   L  LSL + M  F+ A ++ +   DAA DL    ++G
Sbjct: 1101 SGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTANIG 1143


>Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical
            protein M106.1 protein.
          Length = 1244

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 310  SGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLG 438
            SGG   L  LSL + M  F+ A ++ +   DAA DL    ++G
Sbjct: 1101 SGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTANIG 1143


>U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromosome
            and X-chromosomeassociated MIX-1 protein protein.
          Length = 1244

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 310  SGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLG 438
            SGG   L  LSL + M  F+ A ++ +   DAA DL    ++G
Sbjct: 1101 SGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTANIG 1143


>AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical
            protein M106.1 protein.
          Length = 1244

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 310  SGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLG 438
            SGG   L  LSL + M  F+ A ++ +   DAA DL    ++G
Sbjct: 1101 SGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTANIG 1143


>Z98877-11|CAB63408.1|  887|Caenorhabditis elegans Hypothetical
           protein Y69H2.11 protein.
          Length = 887

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 3/20 (15%)
 Frame = -3

Query: 816 WWXCYCSVPCRR---SVTWT 766
           WW C C +PC     SVTW+
Sbjct: 776 WWDCVCPLPCSNQEYSVTWS 795


>U41296-1|AAA93297.1|  579|Caenorhabditis elegans Steroid hormone
           receptor-like proteinprotein.
          Length = 579

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 286 SPPPANRSSGGISPLRTLSLFMDMSPFRQ 372
           SP   N S  GI+P+ T+ + + M PFRQ
Sbjct: 422 SPSANNSSLSGITPVLTMMIDLVMKPFRQ 450


>AY204170-1|AAO39174.1|  579|Caenorhabditis elegans nuclear receptor
           NHR-47 protein.
          Length = 579

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 286 SPPPANRSSGGISPLRTLSLFMDMSPFRQ 372
           SP   N S  GI+P+ T+ + + M PFRQ
Sbjct: 422 SPSANNSSLSGITPVLTMMIDLVMKPFRQ 450


>AF067936-1|AAC19212.2|  579|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 47 protein.
          Length = 579

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 286 SPPPANRSSGGISPLRTLSLFMDMSPFRQ 372
           SP   N S  GI+P+ T+ + + M PFRQ
Sbjct: 422 SPSANNSSLSGITPVLTMMIDLVMKPFRQ 450


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical protein
            K03H1.5 protein.
          Length = 1385

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 120  GLLGDGNNEPYDDFRLPNGKI 182
            GLLG  NN+P DD   P+G +
Sbjct: 1036 GLLGTYNNDPADDLTTPSGTV 1056


>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
            protein 2, isoform c protein.
          Length = 1926

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +2

Query: 209  RVPSGPQLSTGASARTLPSPAARCIPPPRLRT----GLRGEYRRS 331
            R PS P+  + A A   PSPA R   PPR RT      R EY+ S
Sbjct: 1631 RSPSSPRYRSMARASP-PSPAERYGHPPRYRTESPPSSRSEYQMS 1674


>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
            protein 2, isoform b protein.
          Length = 2027

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +2

Query: 209  RVPSGPQLSTGASARTLPSPAARCIPPPRLRT----GLRGEYRRS 331
            R PS P+  + A A   PSPA R   PPR RT      R EY+ S
Sbjct: 1732 RSPSSPRYRSMARASP-PSPAERYGHPPRYRTESPPSSRSEYQMS 1775


>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           c protein.
          Length = 1510

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +1

Query: 154 MTSGYLMERSA-LRKASSVTRTVWPAAVHRCKRPNTPITSCTMHPSPPPANRSSGGISPL 330
           M SG +M+ S    +  ++   V P+++     P  PI   +  P PPP   S   ++P+
Sbjct: 265 MLSGVIMDTSDHYERDYTMDHDVGPSSMKMSPIPPPPIKEESPPPPPPPPVASVSNLAPV 324

Query: 331 RTLSL 345
            ++ L
Sbjct: 325 PSVQL 329


>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           a protein.
          Length = 1507

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +1

Query: 154 MTSGYLMERSA-LRKASSVTRTVWPAAVHRCKRPNTPITSCTMHPSPPPANRSSGGISPL 330
           M SG +M+ S    +  ++   V P+++     P  PI   +  P PPP   S   ++P+
Sbjct: 265 MLSGVIMDTSDHYERDYTMDHDVGPSSMKMSPIPPPPIKEESPPPPPPPPVASVSNLAPV 324

Query: 331 RTLSL 345
            ++ L
Sbjct: 325 PSVQL 329


>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
            activated calciumchannel alpha-1 subunit protein.
          Length = 2027

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +2

Query: 209  RVPSGPQLSTGASARTLPSPAARCIPPPRLRT----GLRGEYRRS 331
            R PS P+  + A A   PSPA R   PPR RT      R EY+ S
Sbjct: 1732 RSPSSPRYRSMARASP-PSPAERYGHPPRYRTESPPSSRSEYQMS 1775


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,474,909
Number of Sequences: 27780
Number of extensions: 462337
Number of successful extensions: 1680
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1676
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)