Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP20_F_B08
         (899 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-12|AAV58884.1|  137|Caenorhabditis elegans Hypothetical p...   109   2e-24
U39851-11|AAV58883.1|  171|Caenorhabditis elegans Hypothetical p...   109   2e-24
U39851-10|AAM22035.1|  144|Caenorhabditis elegans Hypothetical p...   109   2e-24
U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical pr...    29   6.0  
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co...    28   7.9  

>U39851-12|AAV58884.1|  137|Caenorhabditis elegans Hypothetical
           protein C23G10.2c protein.
          Length = 137

 Score =  109 bits (263), Expect = 2e-24
 Identities = 55/111 (49%), Positives = 72/111 (64%)
 Frame = +3

Query: 186 YSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESVVKTTV 365
           YSQA+ A  T+Y+SG LGLD     +  G   QT Q+L NL  VL+A GA   +VVKTTV
Sbjct: 22  YSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVEQTHQSLKNLGEVLKAAGADYGNVVKTTV 81

Query: 366 LLASMDDFQTFNKVYAEYFPKACPARMTYEVSRLPLGAAVEIEAIALCGDL 518
           LL ++ DF   N+VY +YF    PAR  Y+V+ LP G  VEIEA+A+ G++
Sbjct: 82  LLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALPKGGLVEIEAVAIAGEI 132


>U39851-11|AAV58883.1|  171|Caenorhabditis elegans Hypothetical
           protein C23G10.2a protein.
          Length = 171

 Score =  109 bits (263), Expect = 2e-24
 Identities = 55/111 (49%), Positives = 72/111 (64%)
 Frame = +3

Query: 186 YSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESVVKTTV 365
           YSQA+ A  T+Y+SG LGLD     +  G   QT Q+L NL  VL+A GA   +VVKTTV
Sbjct: 56  YSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVEQTHQSLKNLGEVLKAAGADYGNVVKTTV 115

Query: 366 LLASMDDFQTFNKVYAEYFPKACPARMTYEVSRLPLGAAVEIEAIALCGDL 518
           LL ++ DF   N+VY +YF    PAR  Y+V+ LP G  VEIEA+A+ G++
Sbjct: 116 LLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALPKGGLVEIEAVAIAGEI 166


>U39851-10|AAM22035.1|  144|Caenorhabditis elegans Hypothetical
           protein C23G10.2b protein.
          Length = 144

 Score =  109 bits (263), Expect = 2e-24
 Identities = 55/111 (49%), Positives = 72/111 (64%)
 Frame = +3

Query: 186 YSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESVVKTTV 365
           YSQA+ A  T+Y+SG LGLD     +  G   QT Q+L NL  VL+A GA   +VVKTTV
Sbjct: 29  YSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVEQTHQSLKNLGEVLKAAGADYGNVVKTTV 88

Query: 366 LLASMDDFQTFNKVYAEYFPKACPARMTYEVSRLPLGAAVEIEAIALCGDL 518
           LL ++ DF   N+VY +YF    PAR  Y+V+ LP G  VEIEA+A+ G++
Sbjct: 89  LLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALPKGGLVEIEAVAIAGEI 139


>U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical
           protein C25A8.4 protein.
          Length = 1067

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -1

Query: 512 SAKSDGLDLHSCSQR*STDFVCHSSRASFRKIFCIDFVESLEVVHAS*QNSSFHD 348
           S  +DGL++   SQ   +DF   + ++    I   D  + +E+V A+ Q S++ D
Sbjct: 476 STNADGLEISWTSQPMVSDFDKKNLKSFINDIVAADTAKMVEIVVATSQQSAYSD 530


>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
           complex protein protein7 protein.
          Length = 1217

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 22/105 (20%), Positives = 42/105 (40%)
 Frame = -2

Query: 544 GHGPASAMTKSPQRAMASISTAAPNGSRLTSYVIRAGQALGKYSA*TLLKVWKSSMLANK 365
           G GP S    S ++ ++++S+ A N      +   +G +     A T          ++ 
Sbjct: 568 GTGPKSQPKPSEKQLVSNLSSFASNTPSTVKFGFGSGASTTTTIASTTSNTIPFGSGSSV 627

Query: 364 TVVFTTDSNEAPPASSTCRRLSRA*RVCASAPPQTICASRSNPRI 230
             +F      APP ++    +  A    ASAP   + +S +  R+
Sbjct: 628 APLFGAPKTTAPPPTTVPATIPVAPTTIASAPVAAVTSSSNGTRV 672


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,204,292
Number of Sequences: 27780
Number of extensions: 329423
Number of successful extensions: 749
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)